Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b22
(412 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8) 28 3.4
SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 27 6.0
SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61) 27 6.0
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_45326| Best HMM Match : Ank (HMM E-Value=5.2) 27 7.9
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35) 27 7.9
SB_8542| Best HMM Match : PT (HMM E-Value=4) 27 7.9
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10) 27 7.9
>SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 197 NPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPKY*TVFLILISCITRILVV 373
N + + N+K +P W +Y R + SP+P Y T+ + + IT I +
Sbjct: 81 NDEPNNNEKLDPTFWVSYTPTPLSHRYHHRHHHTSPSPSPPYITITITITITITTITTI 139
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 128 PLYVCVGIGCGGAVFYTLRLALRNPDVSW----NKKTNPEPWEAYRNKQYKFYSPIRDYS 295
P+++ +G+ CG A++ + LR P V + KK N + + ++ + + DYS
Sbjct: 38 PMFLLIGVICGLAIYNSTIFDLRFPPVLYKKLLRKKPNLDDFRGFQPSVARNLQYLLDYS 97
Query: 296 KEE 304
++
Sbjct: 98 DDD 100
>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
Length = 406
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 316 GGRRFLLRVVSDGRIELVLLVPVSLPWFRVGLLVP-RYIRITQSQTQSIE 170
G RR+ RV L L P++LP+ R L P R + + ++ QS E
Sbjct: 93 GPRRYATRVQKHDYARLTLKNPIALPFMRRHQLTPQRIMGVVETVVQSNE 142
>SB_35513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 IGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY-RNKQYKF 271
+ G V++ L +ALR+ D +WN TNP Y K Y F
Sbjct: 8 VRAGFDVYFGLNVALRSKDGTWN-YTNPIELVKYATRKAYNF 48
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 219 RRPTLNHGRLTGTSSTSSILPSETT 293
+RP L T T STSS +PSE T
Sbjct: 830 QRPRLGISPTTKTCSTSSFIPSEVT 854
>SB_15612| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
Length = 343
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +3
Query: 177 LCVWLCVILMYLGTRRPTLNHGRLTGTSSTSSILPSETTLRRNLLP 314
+CV+ V +Y+G RPTL +L ++++ +LP+ L+++L+P
Sbjct: 253 VCVFSNVGGVYMGQHRPTLLE-QLVDSTTSQKMLPN-IVLQQHLIP 296
>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 257 CSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLR 96
C +PP + S KI Q + K + Q+H I S I E S +A LR
Sbjct: 255 CYAQPPQNANYYSTEKILQYWQKVMQKKLAQVHRITSFCIQPEISDFFAEVRLR 308
>SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)
Length = 309
Score = 26.6 bits (56), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 103 FEEA*GFDPSVCMCGDRMWWSCV 171
+E GFD +V +C +WW +
Sbjct: 237 WERESGFDKTVALCRGGLWWDAI 259
>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
Length = 473
Score = 26.6 bits (56), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 103 FEEA*GFDPSVCMCGDRMWWSCV 171
+E GFD +V +C +WW +
Sbjct: 421 WERESGFDKTVALCRGGLWWDAI 443
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 NPDVSWNKKTNPEPW-EAYRNKQYKFY---SPIRDYSKEESPAPKY 322
NP + NP+PW N Q K+Y +P Y +P PKY
Sbjct: 170 NPQPKYYPSGNPQPWYYPSGNPQPKYYPSGNPQSRYYPCGNPQPKY 215
>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1528
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 222 FLFQDTSGLRKARRRV*NTAPPHPIPTHT 136
++ D S L+ A NT PPHP P HT
Sbjct: 988 YIVTDVS-LQSAMSERTNTYPPHPPPIHT 1015
>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
Length = 892
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 185 DAEYRTQLHHILSPHIHTEGSKPYASSN 102
D+ Q HI +PH +EGS Y+S++
Sbjct: 734 DSRVAAQAIHINAPHTCSEGSSSYSSAS 761
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,524
Number of Sequences: 59808
Number of extensions: 274016
Number of successful extensions: 752
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -