Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b21
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 276 1e-74
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 56 3e-08
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 33 0.25
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 1.7
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 29 3.0
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 4.0
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8) 29 4.0
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 27 9.2
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 276 bits (676), Expect = 1e-74
Identities = 129/180 (71%), Positives = 147/180 (81%)
Frame = +3
Query: 78 PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 257
P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE TRK RII
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63
Query: 258 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 437
DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NK
Sbjct: 64 DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123
Query: 438 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYL 617
KRS RK AR+ AKV +EEQF TGRL ACV+SRPGQ GR DGYILEGKELEFY+
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYI 183
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +3
Query: 138 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 317
P++I ++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +VK
Sbjct: 37 PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96
Query: 318 AIVVVDATPFRQWYESH 368
+IV VD PF W++ +
Sbjct: 97 SIVQVDNKPFEDWFQEY 113
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 438 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 599
++S+K K + +L +EG E H G LL S C R GY ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 54 RATGGKRAPIRKKRKYELGRPAANTRLGP 140
R GG R P+++ +E +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 393 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 530
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 237 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 350
T++ +I D++ N N VR +TL+ NA +++D F+
Sbjct: 18 TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Frame = +3
Query: 345 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGALE-- 509
F W + L + +G + E +E + N +KT + YL K++GA E
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 510 ----EQFHTGRLLACVASRPGQCGRADGYILEG 596
E FH L CV + + DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 512 AIPHRAFAGLRGESPRSVW 568
A PH A +G+R SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 512 AIPHRAFAGLRGESPRSVW 568
A PH A +G+R PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 512 AIPHRAFAGLRGESPRSVW 568
A PH A +G+R PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 512 AIPHRAFAGLRGESPRSVW 568
A PH A +G+R PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250
>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
Length = 530
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 227
CD+ HC + T+T+ + +V + + ++ ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 12 PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 158
P +S D W K++ K+ I+KKR+ + A LG QR+ +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 435 KKRSQKTARKYLARQRLAKVEGALEE 512
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 236 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 346
+S YH C C+ I Y DP EC CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 115 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 240
P ++P L +TP VHVV + R V +TS+ +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,102
Number of Sequences: 59808
Number of extensions: 411080
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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