Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b21
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   266   8e-72
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   262   1e-70
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.61 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.5  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.3  
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    28   4.3  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   5.7  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   10.0 
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   10.0 

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  266 bits (652), Expect = 8e-72
 Identities = 134/210 (63%), Positives = 159/210 (75%), Gaps = 11/210 (5%)
 Frame = +3

Query: 21  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 197
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 198 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 377
           LDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY +
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 378 PLGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGALEEQFHTG 527
            LGR KK A  T     E EEA +      K+S    RK  +RQ    ++  +E+QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 528 RLLACVASRPGQCGRADGYILEGKELEFYL 617
           RLLAC++SRPGQCGRADGYILEGKELEFY+
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYM 210


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  262 bits (643), Expect = 1e-70
 Identities = 131/200 (65%), Positives = 150/200 (75%), Gaps = 1/200 (0%)
 Frame = +3

Query: 21  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 197
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 198 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 377
           LDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY +
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 378 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 557
            +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +GRLLAC+ASRP
Sbjct: 121 DIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRP 176

Query: 558 GQCGRADGYILEGKELEFYL 617
           GQCGRADGYILEGKELEFY+
Sbjct: 177 GQCGRADGYILEGKELEFYM 196


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 390 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 566
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 567 GRADGYI 587
           G   G++
Sbjct: 452 GMLLGFL 458


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 288 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 416
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 168 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 329
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9   DPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 146
           DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 209 DPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 298 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 167
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 363 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 512
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 75  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 176
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,700
Number of Sequences: 28952
Number of extensions: 274083
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)