Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b17
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07751.1 68415.m00901 NADH-ubiquinone oxidoreductase chain 3,...    31   0.24 

>At2g07751.1 68415.m00901 NADH-ubiquinone oxidoreductase chain 3,
           putative identical to NADH-ubiquinone oxidoreductase
           chain 3 SP:P48908 from [Raphanus sativus]; contains Pfam
           profile: PF00507 NADH-ubiquinone/plastoquinone
           oxidoreductase,chain 3
          Length = 118

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 99  EKCSPFEXGFDPKSISRIPFSLHXXXXXXXXXXXDVEIALIFP 227
           EK S +E GFDP   +R  F +            D+E+   FP
Sbjct: 37  EKLSAYECGFDPSGDARSRFDIRFYLVSILFLIPDLEVTFFFP 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,736
Number of Sequences: 28952
Number of extensions: 25784
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)