Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    32   0.058
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   0.72 
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   3.8  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    26   5.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   6.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.8  

>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 32.3 bits (70), Expect = 0.058
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
 Frame = +3

Query: 207 RTERFKDVLNVYNYSECVG-----DEGLMEKHVLKG---LLVHEHLP--RRHWHEYKAIH 356
           R E+FKD+LN        G      +G+ +++ L+    +L+ E LP  R +W      H
Sbjct: 6   RIEKFKDILNSEEPISLPGLCSLCIQGIPDEYSLRAKAWMLMLEFLPTDRSNWQSVLEKH 65

Query: 357 NKLYSSTHHEMAALIKWRQ-NLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEYFGKVLK 533
            K Y+S   E+  +  WR+  L   +  N ++       S    +F D  + E   K ++
Sbjct: 66  RKTYTSFVQEL-LIDPWRKLTLHEESGENSDHPLNTSDDSKWKEYFDDNQILEQIDKDIR 124


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 344 ILVPVPSRQMLVNEQTFQNMLLHQPFISNALTIIIHIQYILKPFSSVEEH*GILHKP 174
           IL+P      L +    +N LLH   +S    +I+ I Y+L     ++ H  + H P
Sbjct: 195 ILIPATFHYSLPDNANSENALLH---VSRGTAVIVLIVYVLLLVFQLKTHKHVCHDP 248


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 108 IKSLIMKYKNNRVHRSPMTSLDGFVQDALMFFDRTERFKDV 230
           + SL+  ++N  +H S  T    ++QDA++   RTE +  V
Sbjct: 165 LNSLLQSFEN--LHSSKSTD-HAYLQDAMLMLHRTEMYSSV 202


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 438 NREYLAGIQSYSLHLNHFGDMHVTEYFGKVLKLIKAFPLF 557
           N  +   + SYS+ L+ F  + + +Y+     LI+  PL+
Sbjct: 404 NNNFTTYLSSYSVFLSSFAGVIIADYYFVRKGLIRVAPLY 443


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +3

Query: 75   NCVNITENTLKIKSLIMKYKNNRVHRSPMTSLDGFVQDALMFFDRTERFKDVLNVYNYSE 254
            NCVN++EN+  I++ ++     R+ ++  T+L   V     F  R   FK+V       E
Sbjct: 957  NCVNLSENS--IRAWLVSSAVERLIQNEYTTLCEMVDFFSSFSLRECSFKEVDLALELLE 1014

Query: 255  CVGDEGLMEKHV---LKGLLVHEHLPRRHWHEYKAIHNKLYSS 374
                   + K V   LK L+    L + +W E    H  L SS
Sbjct: 1015 ----RATITKDVYFYLKDLVYRRFLLQVNWAEIIDAHEDLESS 1053


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 383  VVRR*IQFIVNCLILVPVPSRQMLVNEQTFQNMLLHQPFIS---NALTIIIHIQYILKPF 213
            V  R ++ +   L  V +   Q++   Q FQ +  H PF+S   +  +III+++  L+  
Sbjct: 1229 VFSRNLRLLKKYLNDVSICWEQIVYLVQDFQRLWYHWPFLSVENDDKSIIINVELYLRSV 1288

Query: 212  SS 207
            SS
Sbjct: 1289 SS 1290


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 153  SPMTSLDGFVQDALMFFDRTER 218
            SP TSL     DAL++ ++T+R
Sbjct: 2650 SPFTSLRRHTADALLYLNKTQR 2671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,374
Number of Sequences: 5004
Number of extensions: 53597
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)