Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    50   1e-06
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875...    40   0.002
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    30   1.3  
03_05_0483 - 24806984-24808324                                         30   1.3  
01_06_1730 + 39494738-39495853                                         30   1.3  
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936...    28   6.9  
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    27   9.1  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     27   9.1  

>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/68 (38%), Positives = 35/68 (51%)
 Frame = +3

Query: 312 EHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHF 491
           E   RR + E+KA H K Y++   E      +R NLR +  HN    AG+ S+ L LN F
Sbjct: 33  EEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRF 92

Query: 492 GDMHVTEY 515
            D+   EY
Sbjct: 93  ADLTNEEY 100


>02_05_0514 +
           29686263-29686728,29687078-29687313,29687435-29687575,
           29687685-29687915
          Length = 357

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/88 (29%), Positives = 41/88 (46%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEYFGKVLK 533
           H+K+Y+S   ++     +++NLR +   NR       SY L LNHF D+   E+    L 
Sbjct: 53  HSKIYASPKEKVKRYEIFKRNLRHIVETNRRN----GSYWLGLNHFADIAHEEFKASYLG 108

Query: 534 LIKAFPLFDPAEDHHKTAYRHNRRCKVP 617
           L       D A+ H  T +R+     +P
Sbjct: 109 LKPGLARRD-AQPHGSTTFRYANAVNLP 135


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 572 VFSWIEERECFDQL-QNFAEVF 510
           VF W E RECF  L QNF E F
Sbjct: 569 VFPWAEHRECFCHLMQNFVEKF 590


>03_05_0483 - 24806984-24808324
          Length = 446

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/89 (26%), Positives = 39/89 (43%)
 Frame = +3

Query: 276 MEKHVLKGLLVHEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLA 455
           MEK VL  L     LP   + +  A H  ++  +H      +  R++ RR    ++  + 
Sbjct: 278 MEKEVLVKLGEALRLPPG-FRKVLARHPGIFYLSHKLRTQTVVLRESFRRHMLVDKHPMM 336

Query: 456 GIQSYSLHLNHFGDMHVTEYFGKVLKLIK 542
           GI+   LHL H G     +  GK  K ++
Sbjct: 337 GIRYQYLHLMHMGQEEAGKRKGKGRKTVR 365


>01_06_1730 + 39494738-39495853
          Length = 371

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 333 WHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTE 512
           W E+  +    +   H    A   ++ N+R +  HN+    G + Y L LN FGDM   E
Sbjct: 49  WQEHHHVPRH-HGEKHRRFGA---FKDNVRYIHEHNKR---GGRGYRLRLNRFGDMGREE 101

Query: 513 Y 515
           +
Sbjct: 102 F 102


>03_02_0544 -
           9362615-9362674,9362783-9362857,9362934-9363144,
           9363279-9363403,9363492-9363593,9363676-9363738,
           9363817-9363897,9364248-9364359,9364454-9364626,
           9364722-9364829,9364909-9364992,9365131-9365193,
           9365652-9365738
          Length = 447

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 129 YKNNRVHRSPMTSLDGFVQDALMFFDRTERFKDVLNVYNYSE 254
           Y N ++H+ P T ++    + +  F++    K  + V +Y E
Sbjct: 110 YNNGKIHKVPATDVEALKSNLMGLFEKRRARKFFIYVQDYEE 151


>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 459 IQSYSLHLNHFGDMHVTEYFGKVLKLIKAFPLFDPAEDHHKTAYRHN 599
           +Q+  LH NH    +  E  G   KL++  P    A ++ K A++HN
Sbjct: 27  LQAQVLH-NHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHN 72


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 163 VIGLL*TRLFLYFIIKDLIFNVFSVILTQ 77
           V GLL T +F  F++KDL  N  S+ +T+
Sbjct: 601 VAGLLVTTMFHAFVLKDLFPNDVSIAITR 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,398
Number of Sequences: 37544
Number of extensions: 323549
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)