Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           42   4e-04
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.061
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_3151| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.19 
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          31   0.57 
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)              29   2.3  
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)                     29   2.3  
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)              29   4.0  
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   28   5.3  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 28   7.0  
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_16079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = +3

Query: 327 RHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHV 506
           R WH +K  H K Y+    ++   I W  NL  V +HN E      SY L +NHF D+ V
Sbjct: 179 RQWHAWKDFHGKTYTGEEEDLRRAI-WNDNLEIVKKHNAEN----HSYKLDMNHFADLTV 233

Query: 507 TEY 515
           TE+
Sbjct: 234 TEF 236


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +3

Query: 288 VLKGLLVHEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQS 467
           V  G +V      + W  +K  H K Y++   E A    WR NL+++ +HN E      S
Sbjct: 232 VASGFVVKFDEDEQQWQAWKLFHTKKYTTVTEEGARKAIWRDNLKKIQKHNAEG----HS 287

Query: 468 YSLHLNHFGDMHVTEY 515
           ++L +NH GD+   E+
Sbjct: 288 FTLAMNHLGDLTQDEF 303


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +3

Query: 312 EHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHF 491
           E L   +W  +K+ H K Y + + E      W+ NL+++  HN     G  S+ L +NH 
Sbjct: 22  EPLQDPNWKAWKSFHGKEYPNKNEETMRNFIWQNNLKKIVTHNE----GKHSFKLAMNHL 77

Query: 492 GDMHVTEYFGKVLKL 536
           GDM   E    +L L
Sbjct: 78  GDMTSLEISQTLLGL 92


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +3

Query: 252 ECVGDEGLMEKHVLKGLLVHEHLPRRHWHEYKAIHNKLY-SSTHHEMAALIKWRQNLRRV 428
           E +G + ++  H    L+ ++    R +HEYKA H K Y +   H+    I ++ N R +
Sbjct: 287 EMIGYDDMLTSHYDHYLIDYDRELARLYHEYKAKHGKHYRTHAEHDQRKHI-YKHNFRFI 345

Query: 429 ARHNREYLAGIQSYSLHLNHFGDM 500
           +  NR+ L    SY L  NH  D+
Sbjct: 346 SSKNRQNL----SYKLKTNHLADL 365


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 327 RHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHV 506
           R + +Y+  HNK Y S H        +R N+R +   NR+ L     Y L  NHF D+  
Sbjct: 259 RMYRKYQGQHNKQYDSEHEVSKRKHIFRHNMRYIRSINRKNL----KYKLAPNHFVDLTD 314

Query: 507 TEY 515
            EY
Sbjct: 315 GEY 317


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 34.7 bits (76), Expect = 0.061
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 339 EYKAIHNKLYS--STHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTE 512
           E++  H+K+Y   S HH +  +  +R N+R +   NR  L     Y L  NHFGD+   E
Sbjct: 43  EFREQHDKVYEDDSKHHRLKHI--FRHNVRYIRSMNRRSLP----YKLEPNHFGDLTDDE 96

Query: 513 Y 515
           +
Sbjct: 97  F 97


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 213 ERFKDVL-NVYNYSECVGDEGLMEKHVLKGLLVHEHLPRRHWHEYKAIHNKLYSSTHHEM 389
           +RF DV+       +C   + L+E H+ K L+  + LP    +EY+++ NK+ +    E+
Sbjct: 142 DRFADVMVKDVKTGDCYRADHLLEGHLEK-LMADKKLPEDKRNEYQSVLNKIDNYNMQEL 200

Query: 390 AALIK 404
             LIK
Sbjct: 201 GELIK 205


>SB_3151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 333 WHEYKAIHNKLYSSTHHEMAALIKWRQNL 419
           W  +K+ H K YS  H E   +  W+QNL
Sbjct: 27  WVAWKSYHGKSYSDVHEERTRMAIWQQNL 55


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 339 EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           E++  H+K+Y            +R N+R +   NR  L     Y L LNHF D+   E+
Sbjct: 46  EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSL----PYKLELNHFPDLTDDEF 100


>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = +3

Query: 225 DVLNVYNYSECVGDEGLMEKHVL-KGLLVHEHLPRRHWHEYKAIHNKLYSSTHHEMAALI 401
           D + V  Y   V D     K    KG+    HL    + E++  H+K+Y           
Sbjct: 450 DTVLVSYYDSYVIDYHTFNKWTYDKGIFDIPHLDD-DFDEFRQQHDKVYEDDSEHRRRKH 508

Query: 402 KWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
            +R N+R +   NR  L     Y L  NHF D+   E+
Sbjct: 509 IFRHNVRYIRSMNRRSL----PYKLEPNHFADLTDDEF 542


>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 339 EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           E++  H+K+Y            +R N+R +   NR  L     Y L  NHF D+   E+
Sbjct: 46  EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSL----PYKLEPNHFADLTDDEF 100


>SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)
          Length = 286

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 124 IIKDLIFNVFSVILTQLTSETCSNRTINIIFVML 23
           II ++IF +  +IL  +   T +N  INI +V++
Sbjct: 173 IISNIIFTIIIIILINIIIITINNNNINIFYVII 206


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 339 EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           E++  H+K+Y            +R N+R +   NR  L     Y L  NHF D+   E+
Sbjct: 145 EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSL----PYKLEPNHFADLTDDEF 199


>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
          Length = 234

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 339 EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           E++  H+K+Y            +R N+R +    R  L     Y L  NHFGD+   E+
Sbjct: 46  EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRRSLP----YKLEPNHFGDLTDDEF 100


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 339  EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
            E++  H+K+Y            +R N+R +   NR  L     Y L  NHF D+   E+
Sbjct: 1196 EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSL----PYKLEPNHFADLTDDEF 1250


>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
          Length = 415

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 244 LYTFNTSLNLSVLSKNIRAS-CTNPSKDVIGLL*TRLFLY 128
           LYT  TSL++SV +KNI    C +      GL   R FL+
Sbjct: 296 LYTPKTSLHVSVYTKNIPTRVCIHQKHSYTGLYTPRTFLH 335


>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 321 PRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNL 419
           PR++WHE      KL   T H+    ++W+  L
Sbjct: 590 PRKNWHEVLREDLKLAGLTPHDTQDRVRWKLKL 622


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 339  EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
            E++  H+K+Y            +R N+R +   NR  L     + L  NHF D+   E+
Sbjct: 1288 EFRQQHDKMYEDDSEHCRRKHIFRHNVRYIRSMNRRSL----PHKLEPNHFADLTDDEF 1342


>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 339 EYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           E++  H+K+Y            +R N+R +   NR  L     Y L  NHF D+   E+
Sbjct: 217 EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRCSL----PYKLEPNHFADLTDDEF 271


>SB_16079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 425 GCETQQRVLSGNTVVLITFESFWRYACHRILRQSF 529
           GC T+ RVL G+ +  + +ES  +Y   R++R+ F
Sbjct: 35  GC-TKDRVLKGSILTKVNYESKRQYLHARVVREVF 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,065
Number of Sequences: 59808
Number of extensions: 406329
Number of successful extensions: 1292
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)