Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical pr...    41   6e-04
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    29   3.5  
AF026202-1|AAZ82858.1|  755|Caenorhabditis elegans Histone deace...    28   4.7  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical
           protein T03E6.7 protein.
          Length = 337

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 333 WHEYKAIHNKLYSSTHHE--MAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHV 506
           W +YK   +K YS +  +  M A +K   N+  +  HNR++  G +++ + LNH  D+  
Sbjct: 32  WDDYKEDFDKEYSESEEQTYMEAFVK---NMIHIENHNRDHRLGRKTFEMGLNHIADLPF 88

Query: 507 TEY 515
           ++Y
Sbjct: 89  SQY 91


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 581 LVVVFSWIEERECFDQLQNFAEVFCDMHISKMIQM 477
           LV  F   ++ E FD+LQN A +F +M  S  +Q+
Sbjct: 242 LVSAFEKAQQVEDFDRLQNIARIFVEMVESFYVQI 276


>AF026202-1|AAZ82858.1|  755|Caenorhabditis elegans Histone
           deacetylase protein 4 protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 561 PAEDHHKTAYRHNRRCKVPK 620
           P ++HH TA   NR+C +P+
Sbjct: 26  PTKEHHPTAPTSNRKCDLPR 45


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 432 RHNREYLAGIQSYSLHLNHFGDMHVTEYFGKVLKLI 539
           RH  +Y   + S  LH ++  D+H+ +Y  +VLK++
Sbjct: 327 RHGEQYTNQLAS-DLHNHYKNDLHLEQYAQRVLKMM 361


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 285  HVLKGLL-VHEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGI 461
            HVLK +   H++L  R W E+      +YS+        +    +LRR+         G+
Sbjct: 1002 HVLKQIFGAHQNL--RVWQEFGLTEQTVYSARQRIYPRSLTSLDDLRRIGEPFDNIQLGV 1059

Query: 462  QSYSLHLNHFGDMHVTEYFG 521
            +   L L+  G M    YFG
Sbjct: 1060 EGSQLVLSGVGLMR--GYFG 1077


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,251
Number of Sequences: 27780
Number of extensions: 305570
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)