Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 51  LLLQVSLVNCVNITENTLKIKSLIMKYKNNRV 146
           ++L    VN +     T+ +++L+M Y+NN++
Sbjct: 22  VMLTRGTVNDIVSRNITMVLENLLMNYENNQL 53


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 620 FRHFAASVMPIRGLVVVFSWI 558
           +RHFAA +  +   +V+F++I
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYI 421


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 542 FDQLQNFAEVFCDMHISKMIQM 477
           F+Q Q+F+E F  +H  + +++
Sbjct: 186 FNQFQDFSESFQILHAGRALRI 207


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 542 FDQLQNFAEVFCDMHISKMIQM 477
           F+Q Q+F+E F  +H  + +++
Sbjct: 186 FNQFQDFSESFQILHAGRALRI 207


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 329 PSRQMLVNEQTFQNMLLHQPFISNALTIIIHIQYILK 219
           P R+ ++ +   Q+M      + NAL I+I   Y +K
Sbjct: 658 PDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVK 694


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 542 FDQLQNFAEVFCDMHISKMIQM 477
           F+Q Q+F+E F  +H  + +++
Sbjct: 186 FNQFQDFSESFQILHAGRALRI 207


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 329 PSRQMLVNEQTFQNMLLHQPFISNALTIIIHIQYILK 219
           P R+ ++ +   Q+M      + NAL I+I   Y +K
Sbjct: 748 PDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVK 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,091
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)