Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b16
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC...    38   0.004
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC...    38   0.004
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ...    35   0.038
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    31   0.62 
At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) fami...    30   1.1  
At1g47800.1 68414.m05318 F-box family protein contains F-box dom...    30   1.4  
At1g29090.1 68414.m03561 peptidase C1A papain family protein con...    30   1.4  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    29   2.5  
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t...    29   2.5  
At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / A...    29   3.3  
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    28   4.3  
At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    28   5.7  
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    28   5.7  
At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07...    27   7.6  

>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 288

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEYFGKVLK 533
           H+K Y S   ++     +R+NL  + + N E    I SY L LN F D+   E+ G+ L 
Sbjct: 58  HSKAYKSVEEKVHRFEVFRENLMHIDQRNNE----INSYWLGLNEFADLTHEEFKGRYLG 113

Query: 534 LIK 542
           L K
Sbjct: 114 LAK 116


>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
           identical to papain-type cysteine endopeptidase XCP1
           GI:6708181 from [Arabidopsis thaliana]
          Length = 355

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEYFGKVLK 533
           H+K Y S   ++     +R+NL  + + N E    I SY L LN F D+   E+ G+ L 
Sbjct: 58  HSKAYKSVEEKVHRFEVFRENLMHIDQRNNE----INSYWLGLNEFADLTHEEFKGRYLG 113

Query: 534 LIK 542
           L K
Sbjct: 114 LAK 116


>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 371

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           H K+Y S   +   L  +  NLR +   N E L    SY L LN F D+ + EY
Sbjct: 63  HGKVYDSVAEKERRLTIFEDNLRFITNRNAENL----SYRLGLNRFADLSLHEY 112


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNHFGDMHVTEY 515
           H K+Y S   +   L  +  NLR +   N E L    SY L L  F D+ + EY
Sbjct: 56  HGKVYGSVAEKERRLTIFEDNLRFINNRNAENL----SYRLGLTGFADLSLHEY 105


>At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to SP|P19396 tRNA
           (Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34)
           {Escherichia coli O157:H7}; contains Pfam profile
           PF00588: SpoU rRNA Methylase (RNA methyltransferase,
           TrmH) family
          Length = 350

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +3

Query: 126 KYKNNRVHRSPMTSLDGFVQDALMFFDRTERFKDVLNVYNYSECVGDEGLME-KHVLKGL 302
           +++   VH S    L+       M  +RT+RF+ V+   +YS C+  EGL +  ++    
Sbjct: 115 RFRCGEVHLSSREVLEAVSPH--MMEERTDRFRRVVENRSYSVCLVVEGLSDFGNISAAF 172

Query: 303 LVHEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKW 407
              + L  +  H      +K Y+   H      KW
Sbjct: 173 RSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKW 207


>At1g47800.1 68414.m05318 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 387

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 469 YDCIPAKYSLLCLATRLKFCRHLI 398
           YD I A+Y +LCL    +FC H +
Sbjct: 201 YDPINAQYKVLCLTNVTRFCEHQV 224


>At1g29090.1 68414.m03561 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 355

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +3

Query: 309 HEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQSYSLHLNH 488
           HE +   H  ++    +++YS    +      +++NL+ + + N++   G ++Y L +N 
Sbjct: 39  HEPIVAEHHQQWMTRFSRVYSDELEKQMRFDVFKKNLKFIEKFNKK---GDRTYKLGVNE 95

Query: 489 FGDMHVTEY 515
           F D    E+
Sbjct: 96  FADWTREEF 104


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 375 THHEMAALIKWRQNLRRVARHNREYLAGI----QSYSLHLNHFGDMHVTEY 515
           +HH +A  ++ +     V +HN +++       +SY L LN FGDM   E+
Sbjct: 43  SHHTVARSLEEKAKRFNVFKHNVKHIHETNKKDKSYKLKLNKFGDMTSEEF 93


>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 351

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = +3

Query: 375 THHEMAALIKWRQNLRRVARHNREYLAGI----QSYSLHLNHFGDMHVTE----YFGKVL 530
           +HH +   +  R+    V RHN  ++       +SY L LN F D+ + E    Y G  +
Sbjct: 43  SHHSVPRSLNEREKRFNVFRHNVMHVHNTNKKNRSYKLKLNKFADLTINEFKNAYTGSNI 102

Query: 531 KLIKAFPLFDPAEDHHKTAYRHNRRCKVP 617
           K  +   L  P     +  Y H    K+P
Sbjct: 103 KHHRM--LQGPKRGSKQFMYDHENLSKLP 129


>At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / ACP
           / NADH-ubiquinone oxidoreductase 9.6 kDa subunit
           identical to SP|P53665 Acyl carrier protein,
           mitochondrial precursor (ACP) (NADH-ubiquinone
           oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
           thaliana}; identical to cDNA acyl carrier protein
           precursor GI:468265
          Length = 122

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 447 YLAGIQSYSLHLNHFGDMHVTEYFGKVLKLIKAFPLFDPAE 569
           +L  I+S+S H +H     V +   +VL ++K+FP  DP++
Sbjct: 27  FLGTIRSFSSHDDHLSREAVVD---RVLDVVKSFPKVDPSK 64


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = +3

Query: 273 LMEKHVLKGLLVHEHLPRRHWHEYKAIHNKLYSSTHHEMAALIKWRQNLRRVARHNREYL 452
           + E++ L+ L VH HL  +    YK       S  HHE    I     L    +  +   
Sbjct: 354 VFERNRLRDLTVHSHLLPKFSFHYK-------SQRHHESINTIIEEAILEADEKGVKVMS 406

Query: 453 AGIQSYSLHLNHFGDMHVTEYFGKVLKLI 539
            G+ +    LN  G+M+V +Y    ++L+
Sbjct: 407 LGLMNNREELNGSGEMYVQKYPKLKIRLV 435


>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 30  TKMMLIVLLLQVSLVNCVNITENTLKIKSLIMKYKNNRVHRSPMTSLDGFVQDALMFF-D 206
           T   ++VLL  +SL +  +I  NTLK +   + +K     +  +     ++ D L+ F  
Sbjct: 29  TDRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAP 88

Query: 207 RTERFKDVLNVYNYSECVGDEG 272
            TERF   L+  + ++ V D G
Sbjct: 89  STERFGGSLDSKSIADFV-DSG 109


>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; contains weak hit to
           PF02178: AT hook motif
          Length = 1678

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +3

Query: 189 ALMFFDRTERFKDVLNVYNYSECVGDEGLM------EKHVLKGLLVHEHLPRRHWHEYKA 350
           A+M++D   R K+      ++ C G+  +         H+LK LL   H   +H+ +   
Sbjct: 340 AMMWYDERIRKKETNKESVFTLCCGEGSVKLPFLKESPHLLKNLLSGNHPLSKHYRDNAR 399

Query: 351 IHNKLYSST 377
           I N +++ T
Sbjct: 400 IFNMVFAMT 408


>At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07881
           AT.I.24-9 gene product from [Arabidopsis thaliana] (Mol.
           Gen. Genet. 219 (1-2), 106-112 (1989))
          Length = 1081

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 354 HNKLYSSTHHEMAALIKWRQNLRRVARHNREYLAGIQ 464
           H +L S+     A   KW + LR     N EYL+ IQ
Sbjct: 860 HGRLESTKGTYAAEWTKWEKQLRDTLVANSEYLSSIQ 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,274,728
Number of Sequences: 28952
Number of extensions: 273179
Number of successful extensions: 725
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)