Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b15
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.3  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 488  RPHNTDVPPLHSVDRLVHADVNLHDLQRVAVSGP 589
            +PH +DV P+H     +H      D + V + GP
Sbjct: 1417 KPHESDVEPIHGY--TIHYKPEFGDWETVQI-GP 1447


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 355 FKPSYSTPARKIATAEPNS 299
           F P YS P + IA   PN+
Sbjct: 424 FMPLYSGPYKIIAKPHPNT 442


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 362 VVFQTFVQHPGEED 321
           V FQ   +HP EED
Sbjct: 323 VYFQNEYEHPSEED 336


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 392 CQRFQGQYHQERMRNQ*SVCRYCRC 466
           C+  +     +R RN+   CRY +C
Sbjct: 122 CREEKNCIIDKRQRNRCQYCRYQKC 146


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 249  VCTEILFQGWK 281
            +CT ++ +GWK
Sbjct: 2107 ICTNVIKKGWK 2117


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 386 LICQRFQGQYHQERMRNQ*SVCRY 457
           LIC  +   YH+E+ R    + +Y
Sbjct: 20  LICDSYLKIYHKEKYRKFCRILKY 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,964
Number of Sequences: 336
Number of extensions: 2865
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)