Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b15
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    36   0.005
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.0  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.6  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   8.8  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   8.8  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   8.8  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = +3

Query: 261 ILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN 440
           I+F+ W   N  +   S +AI + G L+E L+ +     T             +   G  
Sbjct: 27  IVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTSLKETE----------FQRGYAGQQ 76

Query: 441 SPCAGTAVVKYSMLSGGHIIQTC-LHFIQSTASYMLMLIFMTYNVW 575
           S   G        L  G   + C L+ +Q   SY LML+ MTYN +
Sbjct: 77  SE--GLLTHHSKSLKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAY 120


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 472 YLTTAVPAHGLLVPHSLLVILTLESLADEARVCSASL*YFKPSYST 335
           +L ++V +   L   S+L    + S +    V S+SL  F PSYST
Sbjct: 228 FLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYST 273


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 226 MLWCSIPACAPKYCSKDGRLPTPWSC 303
           +L    P CAP +   DG  P P  C
Sbjct: 22  LLTSRTPLCAPLFSHLDGMTPCPIDC 47


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 481 SIEYLTTAVPAHGLLVPHSLLVILTLESL 395
           ++E L    P+ G+L+  S  +++T+E L
Sbjct: 19  ALEALVREFPSSGILITFSQFILITIEGL 47


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 310 QQ*QSSSPGCCTKV*NTTEKRCTHGPHLPAIPGSIS 417
           QQ ++   G   ++ NTT +  TH  H P   G IS
Sbjct: 275 QQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPIS 310


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 420 KSECGTNSPCAGTAVVKYSMLSGGHIIQTCL 512
           KSE  TN+P  G + V + +  G  IIQ+ +
Sbjct: 546 KSEFLTNAPKDGASAVTWGVYPGREIIQSTI 576


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 307 PNSS-KALVVFHPWNNISVH 251
           PNS+ K++  FHP NNI ++
Sbjct: 83  PNSNGKSIPTFHPCNNIGIN 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,855
Number of Sequences: 5004
Number of extensions: 46277
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)