Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b15
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0896 + 22355097-22355627 37 0.011
09_04_0273 + 16292553-16293002 32 0.42
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137... 32 0.42
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 29 3.0
01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483 29 3.9
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 28 5.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 5.2
05_03_0179 - 9257066-9258946 28 5.2
11_06_0510 + 24420402-24422582 28 6.8
11_02_0021 + 7443459-7443530,7443994-7444065,7444140-7444213,744... 28 6.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 6.8
01_06_0622 + 30669015-30669279,30669467-30670419 28 6.8
>08_02_0896 + 22355097-22355627
Length = 176
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/86 (29%), Positives = 33/86 (38%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 410
M F+ ILF GW+T+ S +A+FLA LY+ L+ R L +
Sbjct: 4 MSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLRAGRRHRAGGGG 63
Query: 411 NITKSECGTNSPCAGTAVVKYSMLSG 488
S G P A A S G
Sbjct: 64 GAASSAAGPVVPAASDARALLSAAGG 89
>09_04_0273 + 16292553-16293002
Length = 149
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 410
M F+ ILF GW+T S VA+ LA Y+ L+ +R + A A + +
Sbjct: 4 MTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLA-GAKPASI 62
Query: 411 NITKSECGTNSP--CAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYN 569
S +P +A ++ + L + S Y+LML M++N
Sbjct: 63 PPPASSDAARAPLLLPSSAAGRWP----ARLATAGLFGVNSGLGYLLMLAVMSFN 113
>04_03_0361 +
14912420-14912720,14912945-14913117,14913474-14913779,
14913862-14913936,14913976-14914191,14914741-14915527,
14915587-14915681
Length = 650
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 213 VQRMGRRCFRGHVRGRGRGASCGPWLNFND-STKTNINYSEF 91
+Q R +G RGRGRGA C +FND ++ TN N F
Sbjct: 133 IQPQARAASQGRGRGRGRGARCRLTEDFNDRASWTNENTKLF 174
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 280 RLPTPWSCLVQQ*QSSSPGCCTKV*NTTEKRCTHGPHLP 396
R P PWS L ++PG NT + G H+P
Sbjct: 85 RYPNPWSYLTLACSDTTPGIARDAFNTFFSETSSGKHVP 123
>01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 372 ALLCSISNLRTAPRRGRLLLLNQTA-PRRW*SSILGTIFRCTRRNGTP*HDCGHVQRMGR 196
A + I LRT +RGR+L A P+ + T R TR+ +P C HV+ R
Sbjct: 123 AYVRDIGRLRTLLKRGRVLHPCCAALPKVIEAEGSVTKLRLTRKLRSPCCKCRHVKLGDR 182
Query: 195 RCFRGHVRGRGRGA 154
R G+V G GA
Sbjct: 183 RHTWGYVSDGGGGA 196
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 352 KPSYSTPARKIATAEPNSSKALVVFHPWNNISVHTQEW 239
+P+ ST +I + +FHPW NI+ T +
Sbjct: 257 EPNPSTGGIRIQNNRQEQPAEMTIFHPWKNITDRTSAY 294
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 322 SSSPGCCTKV*NTTEKRCTHGP---HLPAIPGSIS-PRANAEPIVRVPVLPLSNTLCC 483
S PG + +++ K H P +P S+S P ANA P++ PV+ + +CC
Sbjct: 523 SDMPGTSKREISSSLKNDRHTPAEEQRMHVPPSVSAPTANAAPMLPAPVVIEEHWVCC 580
>05_03_0179 - 9257066-9258946
Length = 626
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 235 CSIPACAPKYCSKDGRLPTPWSC 303
C + A + CSKDG +PTP C
Sbjct: 136 CLLEAQHAQPCSKDGAVPTPTKC 158
>11_06_0510 + 24420402-24422582
Length = 726
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 276 WKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVN-ITKSECGTN 440
WK+ ++ L A+ +F+AGV KY L RA+S R + +T+ + G N
Sbjct: 131 WKSRPSMRLMSPAIIMFVAGV----TKYGERTLALRAASMDCLRSSMVTQPDPGPN 182
>11_02_0021 +
7443459-7443530,7443994-7444065,7444140-7444213,
7444322-7444463,7445083-7445161,7445975-7446040,
7446951-7447115,7447608-7447690
Length = 250
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 268 NNISVHTQEWNTIA*LWSCPAHG 200
N I T NTI LW PAHG
Sbjct: 212 NKIHAFTSSMNTIISLWVSPAHG 234
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 207 AGHDHSHAMVFHSCVCTEILFQG 275
+GH VF SC CTE+L G
Sbjct: 30 SGHTSLRVSVFDSCFCTEVLPHG 52
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 490 PPDSIEYLTTAVPAHGLLVPHSLLVILTLESLADEARVCSAS 365
PP I +L + V LLVPH + V + L D +AS
Sbjct: 12 PPGMIGHLVSTVELGKLLVPHGIDVTIVLGGQDDGGAAATAS 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,850
Number of Sequences: 37544
Number of extensions: 361547
Number of successful extensions: 1060
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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