Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b15
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 36 0.035
SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092) 32 0.43
SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036) 29 4.0
SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4) 28 5.3
SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33) 28 5.3
SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13) 28 5.3
SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69) 28 5.3
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 24 9.7
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 35.5 bits (78), Expect = 0.035
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 285 TNALELFGSAVAIFLAGVLYEGLKYYREALHTR 383
T+ + GS +A+F+ VLYEGLK RE L R
Sbjct: 122 TSTPGMIGSCIAVFILAVLYEGLKVSREMLKRR 154
>SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092)
Length = 267
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +3
Query: 258 EILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKS 425
++LF+ WK +++ L GS +F +L E ++ R + + +S + + K+
Sbjct: 151 QLLFEDWKLSSSTILIGSCAGVFFLSILSECVRALRSRIADQTTSENPNATTTYKT 206
>SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 617 K*PTAQTKDKGQTQPHVVGHED*HQHVRGGRLNEV 513
K P A T+ QP ++ HED HQ V G L++V
Sbjct: 64 KVPEASTQRNCYAQPTIIRHEDKHQKVTQGDLDDV 98
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 244 PACAPKYCSKDGRLPTPWSC 303
P P YCSKD R P P C
Sbjct: 2140 PESCPSYCSKDCRPPCPLKC 2159
>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
Length = 618
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 417 TKSECGTNSPCAGTAVVK--YSMLS-----GGHIIQTCLHFIQSTASYMLMLIF 557
T S CGTN C T V+K +S+++ G IQ L S++S+ + ++
Sbjct: 170 TVSSCGTNHSCGVTIVLKSCFSLINCWRDISGRFIQAELSHTSSSSSFRIACVY 223
>SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4)
Length = 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 408 PWNRWQMRPVCAALLCSISNLRTAPRRGRLLLLNQTAPRRW 286
P + Q +P+ A+L S+ T P GR L + A RRW
Sbjct: 82 PMDADQPQPLSPAMLLSMKERPTGPPPGRFLPTDIYARRRW 122
>SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -2
Query: 334 PARKIATAEPNSSKALVVFHPWNNISVHTQEWN 236
PA K P K LV PWN H + WN
Sbjct: 367 PAGKDGLRGPKGVKLLVKDTPWNWSEAHEKSWN 399
>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
Length = 1584
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 408 PWNRWQMRPVCAALLCSISNLRTAPRRGRLLLLNQTAPRRW 286
P + Q +P+ A+L S+ T P GR L + A RRW
Sbjct: 1438 PMDADQPQPLSPAMLLSMKERPTGPPPGRFLPTDIYARRRW 1478
>SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13)
Length = 331
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 408 PWNRWQMRPVCAALLCSISNLRTAPRRGRLLLLNQTAPRRW 286
P + Q +P+ A+L S+ T P GR L + A RRW
Sbjct: 185 PMDTDQPQPLSPAMLLSMKERPTGPPPGRFLPTDIYARRRW 225
>SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69)
Length = 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 408 PWNRWQMRPVCAALLCSISNLRTAPRRGRLLLLNQTAPRRW 286
P + Q +P+ A+L S+ T P GR L + A RRW
Sbjct: 82 PMDADQPQPLSPAMLLSMKERPTGPPPGRFLPTDIYARRRW 122
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -3
Query: 258 RCTRRNGTP*HDCGHVQRMGRRCFRGHVRGRGRGASCGPWLNFNDSTKTNINYSEFE 88
R R G + CG R C GRGRG G ++ S T +Y EFE
Sbjct: 193 RGDRVEGDGCYKCGKYGHFARECPDAGGSGRGRGGRGGRRGGYDHSYGTG-SYDEFE 248
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 23.8 bits (49), Expect(2) = 9.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 180 HVRGRGRGA 154
HVRGRGRGA
Sbjct: 731 HVRGRGRGA 739
Score = 21.8 bits (44), Expect(2) = 9.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 174 RGRGRGASCGPW 139
RGRGRGA W
Sbjct: 740 RGRGRGAGARVW 751
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,195
Number of Sequences: 59808
Number of extensions: 397221
Number of successful extensions: 1088
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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