Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b15
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20650.1 68418.m02453 copper transporter family protein simil... 37 0.009
At1g15280.1 68414.m01828 glycine-rich protein 31 0.61
At1g15280.2 68414.m01829 glycine-rich protein 31 0.81
At5g59040.1 68418.m07397 copper transporter family protein simil... 30 1.1
At3g63100.1 68416.m07087 glycine-rich protein 29 1.9
At3g46900.1 68416.m05090 copper transporter, putative similar to... 29 1.9
At2g26975.1 68415.m03236 copper transporter, putative similar to... 28 5.7
At4g30200.3 68417.m04295 expressed protein contains weak similar... 27 7.5
At4g30200.2 68417.m04294 expressed protein contains weak similar... 27 7.5
At4g30200.1 68417.m04293 expressed protein contains weak similar... 27 7.5
At5g33303.1 68418.m03951 hypothetical protein 27 10.0
At2g35550.2 68415.m04355 expressed protein 27 10.0
At2g35550.1 68415.m04354 expressed protein 27 10.0
>At5g20650.1 68418.m02453 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 146
Score = 37.1 bits (82), Expect = 0.009
Identities = 28/113 (24%), Positives = 49/113 (43%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 410
M F+ + ILF WKT + L + +A F+ Y+ L+ R + ++ S+S
Sbjct: 4 MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRR--IQFKSLSSSRRAP 61
Query: 411 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYN 569
+S G ++P + K S L + + Y+LML M++N
Sbjct: 62 PPPRSSSGVSAP----LIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFN 110
>At1g15280.1 68414.m01828 glycine-rich protein
Length = 584
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 216 HVQRMGRRCFRGHVRGRGRG 157
H RM R FRGH RGRG+G
Sbjct: 164 HSDRMSRGRFRGHGRGRGQG 183
>At1g15280.2 68414.m01829 glycine-rich protein
Length = 585
Score = 30.7 bits (66), Expect = 0.81
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -3
Query: 210 QRMGRRCFRGHVRGRGRG 157
QRM R FRGH RGRG+G
Sbjct: 167 QRMSRGRFRGHGRGRGQG 184
>At5g59040.1 68418.m07397 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 151
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 486 GGHIIQTCLHFIQSTASYMLMLIFMTYN 569
GG ++QT ++ +++ SY++ML M++N
Sbjct: 86 GGGLLQTAVYTVRAALSYLVMLAVMSFN 113
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 225 DCGHVQRMGRRCFRGHVRGRGRGASCG 145
D GH + G RGH RGRGRG G
Sbjct: 118 DRGHHRGHGHHHHRGHRRGRGRGHGHG 144
>At3g46900.1 68416.m05090 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 158
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 192 SDDPCAGHDHSHAMVFHSCVC----TEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKY 359
S + H H M+ H TE+LF GW T++ + IFL V+ E L +
Sbjct: 15 SSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAH 74
>At2g26975.1 68415.m03236 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 145
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +3
Query: 189 NSDDPCAGHDHSHAMVFHSCVC----TEILFQGWKTTNALELFGSAVAIFLAGVLYEGLK 356
+S H +S+ ++ H TEILF GW T+ + +FL V+ E L
Sbjct: 9 SSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLA 68
Query: 357 Y 359
+
Sbjct: 69 H 69
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -2
Query: 517 KWRHVCIMWPPDSIEYLTTAV-PAHGLLVPHSLLVILTLESLADEARVCSASL*YFKPSY 341
K+R++C + ++++ L V P GL + ++ L S D ++CS++L +
Sbjct: 271 KYRNLCEV-VDEAVKTLEADVGPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLETIA 329
Query: 340 STPARKIATAEPNSSK 293
+TP A P SSK
Sbjct: 330 TTPPDVAALPSPRSSK 345
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -2
Query: 517 KWRHVCIMWPPDSIEYLTTAV-PAHGLLVPHSLLVILTLESLADEARVCSASL*YFKPSY 341
K+R++C + ++++ L V P GL + ++ L S D ++CS++L +
Sbjct: 271 KYRNLCEV-VDEAVKTLEADVGPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLETIA 329
Query: 340 STPARKIATAEPNSSK 293
+TP A P SSK
Sbjct: 330 TTPPDVAALPSPRSSK 345
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -2
Query: 517 KWRHVCIMWPPDSIEYLTTAV-PAHGLLVPHSLLVILTLESLADEARVCSASL*YFKPSY 341
K+R++C + ++++ L V P GL + ++ L S D ++CS++L +
Sbjct: 254 KYRNLCEV-VDEAVKTLEADVGPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLETIA 312
Query: 340 STPARKIATAEPNSSK 293
+TP A P SSK
Sbjct: 313 TTPPDVAALPSPRSSK 328
>At5g33303.1 68418.m03951 hypothetical protein
Length = 336
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 192 CFRGHVRGRGRGASCG 145
C RGH RGRGRG G
Sbjct: 210 CGRGHGRGRGRGRGRG 225
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 514 WRHVCIMWPPDSIEYLTTAVPAHGLLVPHSLL 419
W H CI P + L+ PA G++VP S L
Sbjct: 29 WLHSCIAVPKTTGIDLSQEPPAEGVMVPQSHL 60
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 514 WRHVCIMWPPDSIEYLTTAVPAHGLLVPHSLL 419
W H CI P + L+ PA G++VP S L
Sbjct: 74 WLHSCIAVPKTTGIDLSQEPPAEGVMVPQSHL 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,986
Number of Sequences: 28952
Number of extensions: 259754
Number of successful extensions: 761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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