Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b14
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41)                 31   1.1  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                29   2.4  
SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39)                 29   2.4  
SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)                        28   7.5  
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  27   9.9  

>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = +2

Query: 101 FDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTKKGETKKSFL 280
           F   T+S + +  D++   A     R+P H I  +  +    PT+     KK   K    
Sbjct: 438 FPAGTVSRWRVIADYVNDHAKTGNKREPKHVIVKVKSLKKIDPTQIENVNKKAFAKFDLS 497

Query: 281 SNTGKAIQSTPSRKVFTPR 337
              GKA + +     + PR
Sbjct: 498 HTQGKASEESVPTVRYEPR 516


>SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41)
          Length = 666

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 264 PRNLFY-QILGKQFRAHHHVKCSPLVL 341
           PR LFY +++G+  R H   +CSP  +
Sbjct: 257 PRGLFYIRVIGRDLRGHEFYRCSPTAI 283


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 65  DDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQ-PLHNIENM 205
           D+I K+ L   TF  A   LFD  G H    A   ++RQ P+H +E +
Sbjct: 207 DEIGKMELFSQTFSRAIQDLFD--GGHSPILATVPIARQKPIHLVEQL 252


>SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 VGSLIYTDEDGDKGCTFEEIEFTKPKHYDN 436
           V  L Y D    KG  +E ++FTK  HY N
Sbjct: 253 VNVLFYYDPKRGKGVPYELVQFTKLLHYSN 282


>SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)
          Length = 306

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 311 PSRKVFTPRAVNVGSLIYTDEDGDK 385
           PSR++ +  AV VGS++Y   D DK
Sbjct: 75  PSRRLTSEPAVRVGSIVYLSCDKDK 99


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  EKISLSKLTFDLATMSLFDIFGDHLTRQAV 163
           EK+  SK    LA   L  +F D+ T QAV
Sbjct: 69  EKVQASKCNMHLAVPLLIGLFADYATMQAV 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,493
Number of Sequences: 59808
Number of extensions: 337726
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)