Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b14
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41780.1 68415.m05164 expressed protein                             28   6.1  
At4g17700.1 68417.m02644 hypothetical protein contains Pfam prof...    27   8.1  

>At2g41780.1 68415.m05164 expressed protein
          Length = 127

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 140 DHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTKKGETKKSFLSN 286
           DH  R AVK  SR  + ++E MG   S   +   +PT   E  K  + N
Sbjct: 65  DH--RLAVKKASRSEMVDLEGMGSEASVIMSNVPQPTSFSEDHKLAIKN 111


>At4g17700.1 68417.m02644 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 254

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 318 VKCSPLVL*MWVLSYILMRMVIKDVHLKKLSSPNLSTMIII 440
           VK S L+   W+  Y  M +     HL+   +PNLS ++I+
Sbjct: 143 VKKSELLTHDWIRLY--MELAFLKAHLRSPKNPNLSKLVIV 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,390
Number of Sequences: 28952
Number of extensions: 244066
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)