Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b12
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.014
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.68 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   3.6  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 164 LILTAATCWLFWLCAYMAQMNPLIGP 241
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 45  SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 140
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 83  SILWGVVGIICPIFAPKGPNRGIIQV 160
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  PLSRSSFSPSFGVWLVLFAPSSHLKDQTEGL 152
           PLS+ S SPS+  + V     S L+  ++GL
Sbjct: 51  PLSKRSTSPSYAPYTVACPSGSLLRPASDGL 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,209
Number of Sequences: 5004
Number of extensions: 53873
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)