Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b12
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   6.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   6.9  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.1  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 384 VTNKCKCFLNLNPKTYCNILLCRILVYLYSSKMNKVEYSMMH 509
           +TN  KC L+  P T     L +IL    S+  NK      H
Sbjct: 40  LTNYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKH 81


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 384 VTNKCKCFLNLNPKTYCNILLCRILVYLYSSKMNKVEYSMMH 509
           +TN  KC L+  P T     L +IL    S+  NK      H
Sbjct: 40  LTNYIKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKH 81


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 399 KCFLNLNPKTY 431
           KC+  L+P+TY
Sbjct: 132 KCYAELSPRTY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,210
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)