Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b12
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    56   2e-08
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    56   2e-08
At5g55290.1 68418.m06890 ATP synthase subunit H family protein c...    55   3e-08
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    29   1.8  
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    29   3.1  
At1g74055.1 68414.m08577 expressed protein                             29   3.1  
At5g36970.1 68418.m04433 harpin-induced protein-related / HIN1-r...    27   7.1  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.1  

>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +2

Query: 77  VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 241
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 242 RLS 250
            LS
Sbjct: 65  ILS 67


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +2

Query: 77  VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 241
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 242 RLS 250
            LS
Sbjct: 65  ILS 67


>At5g55290.1 68418.m06890 ATP synthase subunit H family protein
           contains weak similarity to Vacuolar ATP synthase
           subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase
           9.2 kDa membrane accessory protein) (Swiss-Prot:P81103)
           [Bos taurus]; contains Pfam profile PF05493: ATP
           synthase subunit H
          Length = 70

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +2

Query: 50  MGYSLIPIFVFSILWGVVGIICP-IFAPKGPNRGIIQVVLILTAATC-WLFWLCAYMAQM 223
           MG+ LI   +F ++ G++  +C  I   +GP+  ++ + L++TA  C W+ W   Y+AQM
Sbjct: 1   MGF-LITTLIFVVV-GIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQM 58

Query: 224 NPLIGPRLS 250
           NPLI P LS
Sbjct: 59  NPLIVPILS 67


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 38  YHLK--MGYSLIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAY 211
           YH K  + Y L+ IF  ++ + V G+ C   + K     +I   +++ + T + FW    
Sbjct: 88  YHQKHPVNYLLLGIFTVALAFAV-GLTCAFTSGKVILESVILTAVVVISLTLYTFWAAKR 146

Query: 212 MAQMNPLIGPRLSNETLI 265
               N  +GP L    ++
Sbjct: 147 GHDFN-FLGPFLFGAVIV 163


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 38  YHLK--MGYSLIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAY 211
           YH K  + Y L+ IF  ++ + VVG+ C     K     +I   +++ + T + FW    
Sbjct: 97  YHQKHPVNYLLLGIFTLALAF-VVGLTCAFTNGKVILESVILTSVVVLSLTLYTFWAARK 155

Query: 212 MAQMNPLIGPRL 247
               N  +GP L
Sbjct: 156 GYDFN-FLGPFL 166


>At1g74055.1 68414.m08577 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +2

Query: 134 GPNRGIIQVVLILTAATCWLFWLCA-------YMAQMNPLIGPRLSNETLIWISRTW 283
           GP   +I V++IL   +C+L   CA        +A++NPL   + S   L W+ R W
Sbjct: 53  GPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIK-SGGLLGWLRRKW 108


>At5g36970.1 68418.m04433 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to harpin inducing protein (hin1), Nicotiana
           tabacum, EMBL:AF212183, GI:1619321
          Length = 248

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 56  YSLIPIFVFSILWG-VVGIICPIFAPKGPNRGIIQVVL 166
           Y+L+ +F+  ++ G +VGI+  +F PK P+  I ++ L
Sbjct: 64  YTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQL 101


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 212 MAQMNPL-IGPRLSNETLIWISRTW---GNKINNTQA*SSDFKRPCRGLV--GWFKNVTL 373
           +AQ+  L +G   SN+  IW+ R W   G+  N  Q    + +   RGLV  GW   V +
Sbjct: 297 LAQLKELGLGLEASNKPFIWVIREWGKYGDLANWMQQSGFEERIKDRGLVIKGWAPQVFI 356

Query: 374 I 376
           +
Sbjct: 357 L 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,932
Number of Sequences: 28952
Number of extensions: 272846
Number of successful extensions: 616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)