Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b11
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1794 - 29580767-29584189 38 0.008
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 32 0.30
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 31 0.52
06_01_0626 + 4549661-4550947 28 4.9
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 28 6.5
10_02_0011 + 4148469-4149371,4153358-4153960 28 6.5
10_01_0188 - 2086765-2087743,2087774-2088195 28 6.5
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021... 28 6.5
02_04_0230 + 21103524-21103746,21105393-21105661,21105845-211060... 28 6.5
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 27 8.5
04_01_0404 - 5297341-5297970,5298304-5299179 27 8.5
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 37.5 bits (83), Expect = 0.008
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = +2
Query: 53 YLRIK---MNSALNPDAPEFYPHLAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEF 223
YLR K MN ++P E AV Y + + ++ + Y+ + + E
Sbjct: 222 YLRQKLYAMNYIIDPSKGEVGTTNIAVKNRVYPNTQEILE------LQPIYEKIEKFFEL 275
Query: 224 NEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSG 403
N S + Q +A++ +EL+ ++LK ++ I++L + NDSL DR++ D ++
Sbjct: 276 N--SESVVQEMAERVDELVDKVMN-LELKFPKQSAQIKQLKEDNDSLKDRLDDLQDEIAL 332
Query: 404 ENLPSEAFAS-GLNDNPSHNSSPWNKPVISEKKMGSTIF 517
+ PS+ L ++ + + VI E+ + ST+F
Sbjct: 333 RDDPSDLSEQLKLAEDELNRVKALERSVIEEEVLVSTVF 371
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 151 VNTSISFLCDCRQVWIKLRCIW-IKRGVHFDTQIKEVNRNQNTTAAFVE 8
VN + LC+ R ++ R +W ++R + D E++ NQN A VE
Sbjct: 713 VNPILEVLCENRNEALRQRAVWAVERILRIDEIAYEISGNQNVGTALVE 761
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 31.5 bits (68), Expect = 0.52
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +2
Query: 266 SNELIGTEQPAV-KLKCE-DFTSN-IEKLADVNDSLLDRIN-ISID-TVSGENLPSEAFA 430
S L+GT+ V ++K E TSN ++ L DS LD+ N + D T S + S
Sbjct: 225 SQNLLGTKDINVPRIKGERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCVSSEVN 284
Query: 431 SGLNDNPSHNSSPW 472
S ++ S NSSPW
Sbjct: 285 SRKSNRSSSNSSPW 298
>06_01_0626 + 4549661-4550947
Length = 428
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 458 NSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKDTID 571
+S+PW +EK+ +T+ IG +P P + F+ + +
Sbjct: 57 DSTPWAGADNNEKEAAATLKIGTIQLPTPIMNFRSSAE 94
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 160 YCLVNTSISFLCDCRQVWIKLRCIWIKRGVHFDTQIKEVNRNQNT 26
YC + FL +W RC+W +R +H D K + NT
Sbjct: 168 YCDEPCGVPFL-GVSPIW---RCLWCQRQIHVDCHAKLLKETGNT 208
>10_02_0011 + 4148469-4149371,4153358-4153960
Length = 501
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 68 MNSALNPDAPEFYPHLAAVTQEGYR 142
M +A +P+ +FYP +AAV +G+R
Sbjct: 210 MEAAGSPNLSDFYPAIAAVDLQGWR 234
>10_01_0188 - 2086765-2087743,2087774-2088195
Length = 466
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Frame = +2
Query: 215 PEFNEISNQISQNVA-QQSNELIGTEQ-PAVKLKCEDFTSNIEK-LADVNDSLL---DRI 376
P E+ + +V+ ++S + GT + PA+ + E +N+E ++++N+ ++ D
Sbjct: 87 PNDEEVRRLSTVSVSLKRSRTIFGTPRNPAIDNELETALNNLEAAVSNMNEFVVMPYDTY 146
Query: 377 NISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFI 520
+ + + ++ + + L NP H+S+P P+I ++G I
Sbjct: 147 LYTDNFMFARHVEKQQIINILLQNPCHHSAPLVLPIIGGCRVGKKALI 194
>03_03_0029 -
13900912-13901457,13901574-13901709,13901961-13902179,
13902429-13902801,13903215-13903458
Length = 505
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 568 NCILESKLWTRNVFSSDEYS*SHLLF 491
+C++ES WT +F ++YS + ++F
Sbjct: 222 DCLVESYFWTCAMFHGEDYSRARIIF 247
>02_04_0230 +
21103524-21103746,21105393-21105661,21105845-21106009,
21106081-21106203,21107261-21107473
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 QQSNELIG-TEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISID 391
Q+ ++ IG TE+ +LK E + E+LA++ + + +++NI++D
Sbjct: 226 QEVHDAIGYTEEQISELKKEIQRTRDEQLANITNMVEEKLNITVD 270
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 326 SNIEKLADVNDSLLDRINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNK 478
+ I++L +V+ + R S + V+ +N P + +G SH S W K
Sbjct: 252 ARIQQLGNVHHMNMKREASSAELVTSQNPPKSSGGNGSQLRHSHGLSNWRK 302
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 29 ILISVHFFYLRIKMNSALNPDAPEFYPHLAAVTQE--GYRSVNKTIKSSNQLPMSSSYDL 202
+L ++ + L IK LNP P PHL T E GY V T N M+ S +
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHLCRETCEIGGYEIVEGTRVLINSWAMARSPEY 401
Query: 203 FKTYPEF 223
+ +F
Sbjct: 402 WDDAEKF 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,049
Number of Sequences: 37544
Number of extensions: 256376
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -