Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b11
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)                    39   0.003
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              32   0.40 
SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 31   0.53 
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)                    29   2.8  
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)               28   4.9  
SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)                 28   4.9  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   4.9  

>SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)
          Length = 372

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 374 INISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVI-SEKKMGSTIFIGAKNIPRPQL 550
           ++ S+D  SG +   +   S          S WN+    +  K G+   + AKNI RPQ+
Sbjct: 223 LDTSLDEASGLSKNRKPILSPAVRQGGPMVSSWNRKTRDNNNKDGNFRLLLAKNIQRPQM 282

Query: 551 TFKDTIDNSENLWV 592
            FKD IDNS   ++
Sbjct: 283 KFKDKIDNSNTPFI 296


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 371  RINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQL 550
            R+  S++  S  +L S       N  P HNS   +   + + K  S   + A  +  P+L
Sbjct: 2044 RVISSVEKTSKTSLKSSINIMVSNKGPKHNSEMSSTTSVEKTKSQSKRSLEATKVS-PEL 2102

Query: 551  TFKDTIDNSENL 586
            +F+ T D+ +NL
Sbjct: 2103 SFETTKDSKQNL 2114


>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 184 HRQLI*RLYCLVNTSISFLCDCRQVWIKLRCIWIKR 77
           HRQ   +   +V   + FLC CR+V +K +C+ + R
Sbjct: 436 HRQFRVKAGQIVRRCLKFLCLCREVTVKAKCLCLGR 471


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
 Frame = +2

Query: 101 FYPHLAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELI 280
           FY  LA V + GY  V  T  +    P      LF  YP+   +S  ISQ      N+ +
Sbjct: 417 FYSKLA-VPETGYNDVYVTHATD---PQDFWLMLFHNYPKLEALSEDISQTEDIHINDEL 472

Query: 281 GTEQPAV---KLKCEDFTSNIEKL---ADVNDSLLDRINISIDTVSGENLPSEAFASGLN 442
             E  A+    L     T  ++       V +S   R N  + T S  N P     S  N
Sbjct: 473 VEEGFALFNPPLSPPPVTQKLDACVPNTKVTESTPSRYNTPLPTPSRYNTPWST-PSRYN 531

Query: 443 ---DNPSHNSSPWNKP 481
                PS  ++PW+ P
Sbjct: 532 TPWSTPSRYNTPWSTP 547


>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
          Length = 628

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/101 (28%), Positives = 44/101 (43%)
 Frame = +2

Query: 122 VTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAV 301
           V+ E  RS+   +    QL     Y LF T  + NE+ N+  +      N+ I  E P +
Sbjct: 427 VSLESARSIYPNMVRLQQLTELQQYTLFFTSCDTNELVNKWKERFPLPDNDFIFVE-PVL 485

Query: 302 KLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPSEA 424
            L+    T+ +  LA VN      +  SI  V   +L S+A
Sbjct: 486 ALR----TAALHMLARVNSRQGREVLGSIYQVLVGHLESQA 522


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 65  KMNSALNPDAPEFYPHLAAVTQEGYRSVNKTIKSSNQ 175
           K  SA   ++ E  PH+ AV Q+ Y  + + +++SNQ
Sbjct: 143 KYRSASASESRELPPHIYAVGQKAYCDLKRGLETSNQ 179


>SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)
          Length = 412

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 501 IFFSEMTGLFQGDEL*EGLSLRPLANASLGKFSPLTVSMLILILS 367
           +FF +  G F G E   G+ +R   ++  GKF     SMLI+ILS
Sbjct: 148 LFFYQSKGTFCGFETLIGVDVRNPGDSRTGKFL-ARFSMLIIILS 191


>SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)
          Length = 954

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +2

Query: 239 QISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPS 418
           ++   +++  N+ +G+E         DF  NI  + +V DSLL      +D  S   L  
Sbjct: 668 ELQSALSEMDNQRVGSELRKENCDWLDFKFNIRTVRNVLDSLLYNQGTQLDDESLRTLLV 727

Query: 419 EAFASGLNDNPSHNSSPWNKPVI 487
           EA A  +N  P    S   +P++
Sbjct: 728 EAGAI-VNSRPLSADSNSCEPLM 749


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +2

Query: 299 VKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNK 478
           V  +  DFT+  + +A  +       N+S+D       P    +   +   S+NS P + 
Sbjct: 319 VSKQSRDFTNGKQAIASEDSKTSKHSNVSVDNDDDAFAPEPPQSPPPSPPESYNSEPEDS 378

Query: 479 PVISEKK 499
           P++   K
Sbjct: 379 PLVGPSK 385


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 149 NKTIKSSNQLPMSSSYDLFKTYPE 220
           N T++S   L  ++ YD+FKTY E
Sbjct: 7   NSTLRSGETLQDTNRYDVFKTYEE 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,443
Number of Sequences: 59808
Number of extensions: 311628
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)