Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b11
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.2  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   9.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 143 SVNKTIKSSNQLPMSSSYD 199
           S N+ IKS  + P SSS D
Sbjct: 93  SDNENIKSQKEFPNSSSSD 111


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 567 IVSLKVSCGRGMFLAPMN 514
           IVS +V CGR +   P N
Sbjct: 103 IVSTRVRCGRSLEGYPFN 120


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 476 KPVISEKKMGSTIFIGAKNIPRPQLTFKDTIDNSENLWV 592
           KP+ + K++ S I  G  N+ R   T     D+    W+
Sbjct: 44  KPLWTGKQISSLIIPGNVNMIRTHSTXPXEEDDGPYKWI 82


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 SSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQ 292
           +S YD+  T+    +   ++++ ++ + NE+   E+
Sbjct: 72  NSIYDVSMTFGPVPKFEGEMAEKISNELNEMCPLEK 107


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 567 IVSLKVSCGRGMFLAPMN 514
           IVS +V CGR +   P N
Sbjct: 119 IVSTRVRCGRSLEGYPFN 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,186
Number of Sequences: 438
Number of extensions: 2811
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)