Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b10
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 192 2e-49
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 31 0.83
SB_48943| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 5.8
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 5.8
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 28 5.8
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 28 5.8
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 7.7
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 192 bits (467), Expect = 2e-49
Identities = 90/134 (67%), Positives = 106/134 (79%), Gaps = 2/134 (1%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRFEE 453
+ KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK + EE
Sbjct: 61 RTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEE 120
Query: 454 RYKSGKNKWFFQKL 495
RYKSGKNKWFFQKL
Sbjct: 121 RYKSGKNKWFFQKL 134
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 177 QELRRRYLRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANTLY 356
+E R+ L A R FR Y + PE GK P+ + +R GCK + N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228
Query: 357 S 359
+
Sbjct: 229 A 229
>SB_48943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 82 RTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDK 207
R NP+ G++ + + VL G +AG +A V+ DE +D+
Sbjct: 66 RGNPADPGRVWRQNLIGAVLFGDHAGNEAGAVRRVDELVADE 107
>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 322 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 203
QP + A S GFYS+ + C C Y ++ H ++ C
Sbjct: 97 QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 337 SDYSLQPSRKALSWTSCG 284
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 385 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 501
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 446 KRTRVLKRSFLRFAGSFRSFALNFSKL 366
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 446 KRTRVLKRSFLRFAGSFRSFALNFSKL 366
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 446 KRTRVLKRSFLRFAGSFRSFALNFSKL 366
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 187 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 333
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 235 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMP-TRYTVDFSFEKFSAKDLKDPAK 411
I Y KVH K + + ++K+ PF K N ++P + V +FEK++A + +K
Sbjct: 1083 IKMYMEKVHYYKAKVETYYKTKVMPFYK----NKVVPFYKNKVIPAFEKYTAL-ADELSK 1137
Query: 412 RKKLRFNTRVRFEERYK 462
LR T + YK
Sbjct: 1138 NMTLRAKTYILNSRPYK 1154
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 373 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 498
++ S D +D +KRK++RF FE + YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 446 KRTRVLKRSFLRFAGSFRSFALNFSKL 366
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 242 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIIL 105
+S+ A+ + PY +P+S FL ++ P Y+PL P + L
Sbjct: 13 VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFL 60
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 446 KRTRVLKRSFLRFAGSFRSFALNFSKL 366
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 214 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 393
GH F++ ID++ RK HK +KI R+ IK ++Y+ + T+ +D ++ A
Sbjct: 99 GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150
Query: 394 L 396
+
Sbjct: 151 I 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,426
Number of Sequences: 59808
Number of extensions: 347816
Number of successful extensions: 966
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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