Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b10
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 194 5e-50
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 194 5e-50
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 31 0.42
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.7
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.7
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.7
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 2.2
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 2.2
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 2.2
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 5.1
U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory recep... 28 5.1
AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative chem... 28 5.1
AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 194 bits (472), Expect = 5e-50
Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 2/136 (1%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 453
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 454 RYKSGKNKWFFQKLRF 501
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 194 bits (472), Expect = 5e-50
Identities = 89/136 (65%), Positives = 109/136 (80%), Gaps = 2/136 (1%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 453
KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 454 RYKSGKNKWFFQKLRF 501
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 46 KIHKIGLKIN*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 180
K+ + G K + + K + PG V++VL+GR+ G++ + +K
Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 229 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 378
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 229 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 378
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 229 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 378
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 199 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 360
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 361 --DFS-FEKFSAKDLKDP 405
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 199 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 360
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 361 --DFS-FEKFSAKDLKDP 405
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 199 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 360
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 361 --DFS-FEKFSAKDLKDP 405
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 5.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 199 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 360
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 361 --DFS-FEKFSAKDLKDP 405
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory receptor
family protein 2 protein.
Length = 439
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 16 FCILLYT*SRKIHKIGLKIN*KRTN 90
FC+LL+T RK +++G++ N R N
Sbjct: 80 FCLLLFTTLRKFNQVGVRPNGTREN 104
>AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative
chemoreceptor GUR-2 protein.
Length = 427
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 16 FCILLYT*SRKIHKIGLKIN*KRTN 90
FC+LL+T RK +++G++ N R N
Sbjct: 68 FCLLLFTTLRKFNQVGVRPNGTREN 92
>AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical
protein Y53G8AR.5 protein.
Length = 287
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Frame = +3
Query: 216 ACFRRWYRQVPPESAQE--DGKE*NPQEVQDKAFREGCKL*SLDANTLYS*LQL*KIQRK 389
ACF R+ + QE D ++ ++V+ F C+ D+NT+++ + ++ K
Sbjct: 143 ACFNRYLTECLTGLRQEIQDAQKHMKEQVETNIFCPVCRAQLTDSNTIHNYRENVQLMIK 202
Query: 390 RPERPCKT*EAAFQHASTF*REVQK----WEEQ 476
++ KT + + +ST +VQK W E+
Sbjct: 203 NCKKNQKTLKNKKRRSSTTTEDVQKTIKRWHEE 235
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 166 PCDPRTGHLRPALLYPASLSYPS 98
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 229 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 378
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 340 SSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQR 227
SS YS + + L W YS SCA++ G+C + R
Sbjct: 607 SSWYSTRSDKHGLQWGEAPPYSRMCSCAIN-GSCLHNR 643
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 88 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 189
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 88 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 189
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,096
Number of Sequences: 27780
Number of extensions: 259248
Number of successful extensions: 810
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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