Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b10
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 138 DQHYFTRLHYLTHLGGICTFLVN 70
           + HY +  H  THL G  T  V+
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVNVS 142


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 74  TKNVQIPPRWV 106
           T  V +PPRW+
Sbjct: 672 TLTVNVPPRWI 682


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 26  CCIHNLEKSIKLV*KLTKNVQIPPRWV 106
           C   N    ++   KL   V++PPRW+
Sbjct: 689 CVAANPAAEVRYTAKL--QVKVPPRWI 713


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 182 ITTKVPPTSRTGMLSSLVSTGTP 250
           IT + PP   T      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,639
Number of Sequences: 438
Number of extensions: 3410
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)