Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b10
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 151 4e-37
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 150 5e-37
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 148 2e-36
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 37 0.010
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 34 0.073
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 34 0.073
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.89
At4g34630.1 68417.m04918 expressed protein 29 2.1
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 29 2.1
At1g66070.1 68414.m07499 translation initiation factor-related s... 29 2.1
At5g12000.1 68418.m01403 protein kinase family protein contains ... 28 4.8
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 151 bits (365), Expect = 4e-37
Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRFEER 456
K K+S++K F KV+NY H+MPTRYT+D + SA + K+ + +FEER
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
Query: 457 YKSGKNKWFFQKLRF 501
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 150 bits (364), Expect = 5e-37
Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 456
K K+S++K F+K+VNY HLMPTRYT+D ++ + D LK K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
Query: 457 YKSGKNKWFFQKLRF 501
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 148 bits (359), Expect = 2e-36
Identities = 63/135 (46%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +1
Query: 100 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 279
M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 280 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 456
K K+S++K F+K+VNY HLMPTRYT+D ++ + D L+ K+ + + EER
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
Query: 457 YKSGKNKWFFQKLRF 501
+K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 36.7 bits (81), Expect = 0.010
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 70 IN*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 195
+N ++ P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 75 VNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 33.9 bits (74), Expect = 0.073
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 73 N*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 195
N + P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 76 NRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 33.9 bits (74), Expect = 0.073
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 73 N*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 195
N + P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 76 NRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 427 FNTRVRFEERYKSGKNKWFF 486
+N R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 187 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 300
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 265 RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 420
R K K KR + PF + Y HL+ D K K +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 298 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 477
+IKP+ K +Y L+ T + S A D+KD A N +++ E+ +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 238 DRYPRKVHKRMGKNKIHKR-SKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR 414
DR PR +R G+N + +R S K V H +PT ++DF++E K ++ R
Sbjct: 188 DRSPRS--QRNGRNTVPERYSHENKGFKPVREMHKIPTNGSLDFNYEFRQGKGQRNSTGR 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,759,425
Number of Sequences: 28952
Number of extensions: 242588
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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