Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b09
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   2e-11
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)                    29   3.3  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_57503| Best HMM Match : Brevenin (HMM E-Value=2)                    28   5.8  
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)                    28   5.8  
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 39/125 (31%), Positives = 64/125 (51%)
 Frame = +3

Query: 129 LKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMAN 308
           ++  E R    +  +T L++ ERIE  + R  +  +  ER+I  A + GD      +  N
Sbjct: 17  IRSRERRKHLYKNLITALVQHERIETTLTRCQDLARVTERMIDLA-KQGD-----EETVN 70

Query: 309 FWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVK 488
            WL+ K LV K+F  L+PR+E  T  YT++ + P  + T+     ++EL GN  P L+  
Sbjct: 71  SWLMNKDLVPKVFAELLPRYEGITKGYTQVYRIP-PRKTDSAQMGIVELVGNDLPQLLPS 129

Query: 489 QPNNR 503
           +   R
Sbjct: 130 EEELR 134


>SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 39/125 (31%), Positives = 64/125 (51%)
 Frame = +3

Query: 129 LKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMAN 308
           ++  E R    +  +T L++ ERIE  + R  +  +  ER+I  A + GD      +  N
Sbjct: 17  IRSRERRKHLYKNLITALVQHERIETTLTRCQDLARVTERMIDLA-KQGD-----EETVN 70

Query: 309 FWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVK 488
            WL+ K LV K+F  L+PR+E  T  YT++ + P  + T+     ++EL GN  P L+  
Sbjct: 71  SWLMNKDLVPKVFAELLPRYEGITKGYTQVYRIP-PRKTDSAQMGIVELVGNDLPQLLPS 129

Query: 489 QPNNR 503
           +   R
Sbjct: 130 EEELR 134


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
 Frame = +3

Query: 21   KNKVKEIK-ITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFER 197
            K+  +EI+ I  ++    K + +LR N K   + L  +KG   R+      +TGL+  E+
Sbjct: 1850 KSVTQEIETIKRDKERADKEMEQLRSNKKNLEKDLTQVKGELSRLGSESDRLTGLVAEEK 1909

Query: 198  IELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKV 353
               ++   ++  QY + L  +  R G+  +    +       +QL HK+F++
Sbjct: 1910 GN-SVRLKEDLEQYKQLLQEKEARLGEVAREREQLNK---TNEQLQHKVFEL 1957


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 207  NINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 356
            N N  DE  Q   +++ EAIR  +    ++ + NFW L+  ++ + +  +
Sbjct: 2197 NFNTKDE-EQKVRKVVEEAIRRSNEASKSLHVINFWPLQANILPESYNYI 2245


>SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)
          Length = 311

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 357 VPRFENSTVSYTKMIK-APKAQNTEHTNKIVLELRGNPYPDLIVKQPNNRL 506
           VP  +  T +YTK  K  P  QN   TN +   +  +PY  L+     NR+
Sbjct: 73  VPNEDYQTGTYTKPQKYGPLCQNDTQTNVLENTMFRHPYESLLAPSLKNRV 123


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 12   FPIKNKVKEIKITMNQAEVSKLVSKLRMNIKPEH--RRLKNLKGPEGRIDKLRKTVTGLI 185
            FPIKN   E ++TMN   +S L  +  +    +H   R  +L+   G   +L K     +
Sbjct: 869  FPIKNYEWETELTMNVNNLSLLALRQMLRFAQDHVEDRADHLRMTGGLRRRLGKRKNAPL 928

Query: 186  KFERIELNINR 218
              E +EL I++
Sbjct: 929  GVEVVELLIHQ 939


>SB_57503| Best HMM Match : Brevenin (HMM E-Value=2)
          Length = 247

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = +3

Query: 90  RMNIKPEHRRLKNLKGPEGRIDKL-----RKTVTGLIKFERIELNINRGDEARQYAERL- 251
           RMN++P+H++ K  K    +  +L     +K ++ + + E  ELN  R  EA ++ ERL 
Sbjct: 71  RMNMRPKHKKHKRRKRGHHKRHELEGQPPKKKLSTIFEPEEGELNAER-KEADEHNERLK 129

Query: 252 ISEAIRHGD 278
             + + H D
Sbjct: 130 RDDDVDHAD 138


>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
          Length = 823

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 3   DLRFPIKNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGP 140
           DL+  +    KEIK++ N+  VSK V KL  +       L +++ P
Sbjct: 574 DLKAELAGFEKEIKVSTNRKLVSKQVPKLNFDFLVPSESLFDIESP 619


>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 378 TVSYTKMIKAPKAQNTEHTN-KIVLELRGNPYPD 476
           TV++TK  + PK  +  H+N +  L +  + YPD
Sbjct: 623 TVTWTKSAEDPKRYSVSHSNGRYTLRVTSSVYPD 656


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +3

Query: 21   KNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERI 200
            +N + E+K  + ++E  K  +KL   +K   RRL+NLK     +++ +      +K +++
Sbjct: 3350 RNDMAELKRYLVESEKKK--TKLEEEVKRVRRRLENLKQKAIELERQKDDELCEVKGDKV 3407

Query: 201  ELNINRGDEARQYAERL 251
             L   +  E R+  E L
Sbjct: 3408 SLEKEQW-ELREAIEEL 3423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,330
Number of Sequences: 59808
Number of extensions: 292280
Number of successful extensions: 2623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2620
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)