Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b09
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 181 NPVTVLRNLSILPSGPLRFFNRRCSGLIFIRSFETSLET 65
           NP   +    I PS    F   +C+  +F  SF T+  T
Sbjct: 95  NPFIGMGEFLIDPSLEDEFMGPKCAAFLFQLSFATTSTT 133


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 163  RNLSILPSGPLRFFN 119
            RN+ ILPSG L   N
Sbjct: 1359 RNIQILPSGELMLSN 1373


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 163  RNLSILPSGPLRFFN 119
            RN+ ILPSG L   N
Sbjct: 1355 RNIQILPSGELMLSN 1369


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 450 ELRGNPYPDLI 482
           + RGNP PD+I
Sbjct: 26  QARGNPQPDII 36


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 341 FMNKLFFKKPKIGHVHS 291
           +M  LFF   K GH H+
Sbjct: 116 WMPDLFFSNEKEGHFHN 132


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 341 FMNKLFFKKPKIGHVHS 291
           +M  LFF   K GH H+
Sbjct: 116 WMPDLFFSNEKEGHFHN 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,241
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)