Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b09
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54210.1 68416.m05992 ribosomal protein L17 family protein co...    46   2e-05
At5g09770.1 68418.m01131 ribosomal protein L17 family protein co...    42   2e-04
At5g64650.1 68418.m08125 ribosomal protein L17 family protein co...    42   4e-04
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    30   1.2  
At5g42570.1 68418.m05183 expressed protein low similarity to SP|...    29   2.7  
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    28   3.6  
At4g17785.1 68417.m02654 myb family transcription factor (MYB39)...    28   4.8  
At4g04710.1 68417.m00692 calcium-dependent protein kinase, putat...    28   4.8  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   6.3  

>At3g54210.1 68416.m05992 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 211

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +3

Query: 114 RRLKNL-KGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKP 290
           RR+  L + P+ R   LR   T L+K  RI+    R    R++ +++I+ A + G  HK 
Sbjct: 100 RRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLA-KDGSLHKR 158

Query: 291 TMDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIK 404
              +   ++ EKQ+VH LF  +  R+      YT++I+
Sbjct: 159 RQALG--YIYEKQIVHALFAEVPDRYGERNGGYTRIIR 194


>At5g09770.1 68418.m01131 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 160

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +3

Query: 117 RLKNLKGPEG-RIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPT 293
           + + L  P G R+  LR  V+ L+K ERIE  + +  E R+ A+ +I +  + G      
Sbjct: 3   KFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMI-QLGKEGSL-SAA 60

Query: 294 MDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIK 404
              A F +    ++HK+F  L  R+++    YT++++
Sbjct: 61  RRAAGF-VRGDDVLHKIFTELAHRYKDRAGGYTRLLR 96


>At5g64650.1 68418.m08125 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 160

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +3

Query: 117 RLKNLKGPEG-RIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPT 293
           + + L  P G R+  LR  V+ L++ ERIE  + +  E R+ A+ +I    + G      
Sbjct: 3   KFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLG-KEGSL--AA 59

Query: 294 MDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIK 404
              A  ++    ++HK+F  L  R+++    YT+M++
Sbjct: 60  ARRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLR 96


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = -1

Query: 262 ASDISLSAYWRASSPRLIFNSILSNFINPVTVLRNLSILPSGPLRFFNRRCSGLIFIRSF 83
           AS  SLS+  +A +PR +FN   S+ + P  ++   S +       F RR S L  I + 
Sbjct: 3   ASLASLSSLAKAGAPRSLFNRHGSHRLPPPQIIPLASSIKKHITTSFYRRGSSLKNIYAL 62

Query: 82  ETS 74
           ETS
Sbjct: 63  ETS 65


>At5g42570.1 68418.m05183 expressed protein low similarity to
           SP|P51572 B-cell receptor-associated protein 31 (6C6-AG
           tumor-associated antigen) (DXS1357E) {Homo sapiens}
          Length = 218

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 63  EVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTG-LIKFERI 200
           E++ L +K++        + K LKG +G  + LRK   G L++++R+
Sbjct: 148 EIAALKAKIKTLESESESKGKELKGAQGETEALRKQADGFLMEYDRL 194


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 111 HRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDC--H 284
           HR+ ++L+G +  + +L+     L+ F R    +  GD A+Q         + H      
Sbjct: 99  HRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVRE 158

Query: 285 KPTMDM 302
            PTM++
Sbjct: 159 MPTMEL 164


>At4g17785.1 68417.m02654 myb family transcription factor (MYB39)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 360

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 315 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQ---NTEHTNKIVLELRGNPYPD 476
           +L+ QL+HK+ +++ P+   +  S+   +  PK +   N+ +TN +      NP PD
Sbjct: 168 ILKLQLIHKMLQIITPKAIPNISSFKTNLLNPKPEPVVNSFNTNSV------NPKPD 218


>At4g04710.1 68417.m00692 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 575

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 51  MNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIELNINR-GDE 227
           M Q      + KL + +  E    + +KG +   + +    +G I +E +++ +NR G +
Sbjct: 308 MKQFRAMNKLKKLALKVIAEGLSEEEIKGLKTMFENMDMDKSGSITYEELKMGLNRHGSK 367

Query: 228 ARQYAERLISEAIRHGDCHKPTMDMANF 311
             +   + + EA+        T+D   F
Sbjct: 368 LSETEVKQLMEAVSADVDGNGTIDYIEF 395


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 461  TSQF*YNFICM-FSILSF--RC-FNHFCIRNCRVFKSW 360
            TS F Y   C+  +IL +  +C F H+C+ +C +++ W
Sbjct: 1236 TSLFIYLISCLTVNILRYFAKCPFCHYCLTDCHLYEEW 1273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,659
Number of Sequences: 28952
Number of extensions: 210376
Number of successful extensions: 501
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)