Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b08
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 116 1e-26
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 29 3.1
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9) 27 9.4
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) 27 9.4
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 27 9.4
SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05) 27 9.4
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 116 bits (280), Expect = 1e-26
Identities = 53/79 (67%), Positives = 67/79 (84%)
Frame = +1
Query: 388 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTN 567
TLIEA +DVKTTDGY+LR+FCIGFT + +KT YA+HTQ++AI KKM +IITR+V+
Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61
Query: 568 SELREVVNKLIPDSIAKDI 624
++L+EVVNKLIPDSI KDI
Sbjct: 62 NDLKEVVNKLIPDSIGKDI 80
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 281 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 102
LRK L S + RE + L FNP E+ +V L + ++ + +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 220 VFEVSLADLQADTDAERSFRKFRLIAEYVQ 309
+F + +D+QA+++ FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -2
Query: 407 MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 243
++ SM +C ++ + +SL R + + +L PC Y ++++L + + S+S CR
Sbjct: 948 VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 85 IVDPFTRKDWYDVKAPSMFSKRQ 153
+V+P+ KDW D SMFS RQ
Sbjct: 98 LVEPWRWKDWEDFTQSSMFSGRQ 120
>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 174 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 28
VD + + +++ D+ PIF + V LLL T FT L+ + DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 323 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 189
S LR Y AI + L D + ++T P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375
>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
Length = 229
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 346 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 450
L T + + +WQT + N+ VK TDG + C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176
>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
Length = 427
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 169 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF--RKFRLIAEYVQGRNVLCNFHGM 342
+ + G +A + + + +AD +++ D ER+ + FRL Y +L HG+
Sbjct: 181 LTKDSGLMVALKSQSSSICKFKMADSESE-DQERTIITQLFRLGHSYDDIVGLLSKCHGI 239
Query: 343 DLTTDKLRWMVKKW 384
+++ L+ +K W
Sbjct: 240 NISVRTLKRRLKDW 253
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 226 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 393
E+ A L+ D D+ + F +F +A + QG+ ++ NF + TD + + V W TL
Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244
>SB_2071| Best HMM Match : REJ (HMM E-Value=1.4e-05)
Length = 592
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 273 RPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDI-VPIFASE 97
RP ++V + ++ S S SN + G+ +P+A R +LDI VP+ A++
Sbjct: 512 RPVTITVIDMATNPYKDDKSASSVESNVMEIDLASDSGSRIPVAGLREALDIRVPVNAAQ 571
Query: 96 WVDNL 82
+ +
Sbjct: 572 QANQI 576
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,771,739
Number of Sequences: 59808
Number of extensions: 412080
Number of successful extensions: 1110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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