Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b08
         (624 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   283   1e-76
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   283   1e-76
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   268   5e-72
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   264   5e-71
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   212   3e-55
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   138   4e-33
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    28   8.9  
AY010554-1|AAG32586.1|  266|Drosophila melanogaster ACP32 protein.     28   8.9  
AY010547-1|AAG32579.1|  266|Drosophila melanogaster ACP32 protein.     28   8.9  
AY010544-1|AAG32576.1|  266|Drosophila melanogaster ACP32 protein.     28   8.9  
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P...    28   8.9  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  283 bits (695), Expect = 1e-76
 Identities = 134/180 (74%), Positives = 153/180 (85%)
 Frame = +1

Query: 85  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 264
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 265 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 444
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 445 FCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 624
           FCIGFT KD  SQRKTCYAQ +QVR I  +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  283 bits (695), Expect = 1e-76
 Identities = 134/180 (74%), Positives = 153/180 (85%)
 Frame = +1

Query: 85  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 264
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 265 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 444
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 445 FCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 624
           FCIGFT KD  SQRKTCYAQ +QVR I  +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  268 bits (656), Expect = 5e-72
 Identities = 130/182 (71%), Positives = 149/182 (81%), Gaps = 2/182 (1%)
 Frame = +1

Query: 85  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTD 261
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 262 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 441
            E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LR
Sbjct: 81  PEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 140

Query: 442 VFCIGFTNKDSLSQRKTCYAQHTQVRAIXK-KMCEIITRDVTNSELREVVNKLIPDSIAK 618
           VFCIGFT KD  SQRKTCYA  +QVR I   +M +IIT +V+ ++L+++VNKL  DSIAK
Sbjct: 141 VFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAK 200

Query: 619 DI 624
           DI
Sbjct: 201 DI 202


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  264 bits (648), Expect = 5e-71
 Identities = 123/168 (73%), Positives = 143/168 (85%)
 Frame = +1

Query: 85  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 264
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 265 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 444
           ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRV
Sbjct: 81  ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140

Query: 445 FCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSELREVV 588
           FCIGFT KD  SQRKTCYAQ +QVR I  +M +IIT +V+ ++L++++
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  212 bits (518), Expect = 3e-55
 Identities = 102/137 (74%), Positives = 115/137 (83%)
 Frame = +1

Query: 214 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 393
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 394 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSE 573
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR I  +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 574 LREVVNKLIPDSIAKDI 624
           L+++VNKL  DSIAKDI
Sbjct: 134 LKQLVNKLALDSIAKDI 150


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  138 bits (335), Expect = 4e-33
 Identities = 65/95 (68%), Positives = 78/95 (82%)
 Frame = +1

Query: 340 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 519
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 520 AIXKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 624
            I  +M +IIT +V+ ++L+++VNKL  DSIAKDI
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 95


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
            transmembrane protein protein.
          Length = 3004

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 215  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTS 117
            PF P +  +FVPW R+  + P  + L+ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>AY010554-1|AAG32586.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 263 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 400
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AY010547-1|AAG32579.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 263 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 400
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AY010544-1|AAG32576.1|  266|Drosophila melanogaster ACP32 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 263 RKGLSANSD*SPNMCKDVMCSATSTAWTSQPISSGGWLKNGRLSSK 400
           R+G +A +D     C DV  + T+T W   P++ G   ++G L  K
Sbjct: 21  REGRTARAD---QRCSDVADADTATHWLPGPVALGQLPEHGALGQK 63


>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
            protein.
          Length = 3004

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 215  PFNP-SEAIFVPWVRLTSVVPTCLLLNIDGALTS 117
            PF P +  +FVPW R+  + P  + L+ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,332,402
Number of Sequences: 53049
Number of extensions: 597127
Number of successful extensions: 1791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)