Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b08
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   244   5e-65
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           241   3e-64
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.4  
At5g45490.1 68418.m05588 disease resistance protein-related cont...    29   2.5  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   5.8  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   7.7  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  244 bits (596), Expect = 5e-65
 Identities = 114/179 (63%), Positives = 145/179 (81%)
 Frame = +1

Query: 88  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 267
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78

Query: 268 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 447
            ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+F
Sbjct: 79  NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLF 138

Query: 448 CIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 624
           CI FT + +   ++TCYAQ +Q+R I +KM +I+ R+ ++ +L+++V K IP++I ++I
Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREI 197


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  241 bits (590), Expect = 3e-64
 Identities = 114/179 (63%), Positives = 143/179 (79%)
 Frame = +1

Query: 88  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 267
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 268 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 447
            ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+F
Sbjct: 79  NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMF 138

Query: 448 CIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 624
           CI FT + +   ++TCYAQ +Q+R I +KM EI+ ++ ++ +L+E+V K IP++I ++I
Sbjct: 139 CIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREI 197


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -1

Query: 549 NDFTH-FLXDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 385
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At5g45490.1 68418.m05588 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 354

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 100 TRKDWYDVK--APSMFSKRQVGTTLVNRTQG-TKIASEGLKGRVFEV-SLADLQADTDAE 267
           T KDW DV   A     K++       R +  +K+    + G   E+ SL     D    
Sbjct: 22  TCKDWLDVNGLAKGNLEKKRDDNEEEERLKTESKLPGHDIHGFDNEIKSLQHFLLDQKVR 81

Query: 268 RSFRKFRLIAEYVQGRNVLC 327
           R F+   ++ EY  G+  LC
Sbjct: 82  REFKSLVIVGEYGVGKTALC 101


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 219  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 73
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 386 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 234
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,761
Number of Sequences: 28952
Number of extensions: 283535
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)