Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b07
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        115   2e-26
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   3.0  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  28   3.0  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   27   5.3  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)             27   7.0  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        27   7.0  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)                    27   9.2  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  115 bits (276), Expect = 2e-26
 Identities = 64/119 (53%), Positives = 75/119 (63%)
 Frame = +2

Query: 47  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 226
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 227 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAV 403
           Q  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  KT K+ +K + F  R YAV
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAV 129


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +2

Query: 161 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 331
           ASK SK RV R  IA++    H  ++  +RN   N K     +R  K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 194 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 307
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
           +N+K    DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 230 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVY 397
           K K   R   +NK Y  +DL+ +++ A+     K     +  + IR++ +F P +Y
Sbjct: 18  KWKRQTRGKQENKLYSFVDLKGEQSDALLVEAFKKGGLDEVNRLIREEGVFLPYLY 73


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 RNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 367
           +  +K K+ K  D + +K+RA  + LTK + +IK   E+R
Sbjct: 289 KKKHKKKEKKEKDEK-RKSRAEDEGLTKEQLEIKEANELR 327


>SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 206 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI--KTRKEIRKKS 376
           R  +V  +   VN+R+   NKK+K ++ R++    M+  +    +K+  K  K + K+S
Sbjct: 23  RPKVVNMRSKVVNMRSKVVNKKFKAVNKRSRAVN-MKSTVVSMRSKVVDKRSKSVDKRS 80


>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
          Length = 160

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = +2

Query: 125 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKT 304
           TN  V  ++ G    + + R ++K   R+     +++K   R   K K  K    R++K 
Sbjct: 24  TNAVVFVLSQGKIRSIERQRQIKKLTKRI-----KRIKALNRGKRKKKHSK----RSQKL 74

Query: 305 RAMRKALTKHEAKIKTRKEIRKK 373
           R MR+ L + + K K+ ++ R+K
Sbjct: 75  REMRRWLRRFKQKGKSDRDARRK 97


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 393 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 283
           TL G R F       L++ S LV+  RIAR+F   KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 280  FRFKSQEDPCYAQGSY*TRSKDQDEERD 363
            F   S  DP Y  G Y     D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234


>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
          Length = 245

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 128 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 307
           N+   K  G V S +    V ++ I ++ +    KMK  + +HY++       L AK T 
Sbjct: 79  NVTSYKYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKLTN 138

Query: 308 AMRKALTKH 334
             +    K+
Sbjct: 139 KSKCRSVKY 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,032
Number of Sequences: 59808
Number of extensions: 159656
Number of successful extensions: 494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)