Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b04
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   5.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   5.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 350 VKPLKTSLSATKTLDIPFALAMDSAAGPH 264
           +KP   S S+++ LDIP  +  D ++G H
Sbjct: 22  IKPQSPS-SSSRILDIPCKVCGDFSSGKH 49


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 350 VKPLKTSLSATKTLDIPFALAMDSAAGPH 264
           +KP   S S+++ LDIP  +  D ++G H
Sbjct: 22  IKPQSPS-SSSRILDIPCKVCGDFSSGKH 49


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 QQVHIWFQPQALRHHLQ 227
           +QV +WFQ + ++H  Q
Sbjct: 46  RQVKVWFQNRRMKHKRQ 62


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 277 QQVHIWFQPQALRHHLQ 227
           +QV +WFQ + ++H  Q
Sbjct: 177 RQVKVWFQNRRMKHKRQ 193


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 277 QQVHIWFQPQALRH 236
           +Q+ IWFQ + ++H
Sbjct: 130 RQIKIWFQNRRMKH 143


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 277 QQVHIWFQPQALRH 236
           +Q+ IWFQ + ++H
Sbjct: 121 RQIKIWFQNRRMKH 134


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 425 LLSERRCCHELRPSL 469
           LL E RC   LRP L
Sbjct: 276 LLQEYRCIFSLRPGL 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,759
Number of Sequences: 336
Number of extensions: 3639
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)