Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b04
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 32 0.50
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 30 2.0
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 29 3.5
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5) 29 4.7
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 28 6.2
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26) 28 6.2
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) 28 6.2
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 28 6.2
>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +1
Query: 466 LDVSPITDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAID 645
LDV+P++DI+ I +TFVRTIYAGNA+ T+++ DPIKV+TVRGTAF A +GG+ +
Sbjct: 2 LDVAPLSDIMEILSEDTFVRTIYAGNAVTTIKSTDPIKVMTVRGTAFEAASTDGGAVTAE 61
Query: 646 KAPEGDYKTDLVEF 687
AP D +L F
Sbjct: 62 DAPSSDTNNELSSF 75
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 76 ILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLN 213
++L+ PNS H FL L +++ L+L + + P TQ +N
Sbjct: 502 LILVPCNTPNSNHWFLLAVLPHMKAVLLLDSRAVDYVKPPTQKAMN 547
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 77 SCLSKCLHP-IAGIYFCLDSCVVCKVL*CSPSTTMRYYLQQPKIH*MLPRKLEVMSQCLW 253
+CL C++P ++ ++ C +CV V CSP + ++ + R L +S C+
Sbjct: 1266 TCLFACVYPSVSRVFTCRSACVHLSVRVCSPVCPRVFTCLFACVYPSVSRVLTCLSACVH 1325
Query: 254 LEPNV 268
L V
Sbjct: 1326 LSVRV 1330
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 121 LSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSV--LVAGTKCGPAAESIAK 294
+ G LR + LVL + + S A + LNAA G V+V +VAGT+ GP A+ A
Sbjct: 655 MKGDLR--DALLVLISYGQDP-SQAAADKLNAALHDGDTVTVARIVAGTQQGPLADLEAS 711
Query: 295 AN 300
N
Sbjct: 712 YN 713
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 355 ETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRT 528
E PL+ Q F +++ A G+T P + D+SP + N +V T
Sbjct: 357 ENFVPLLQRRQAPLLFVRVVSQALETGRTTSPSWDYRPDMSPFHGTLTSPSGNVYVAT 414
>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 439 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 552
T +P+V A+L + ++ AN FV +Y AI+
Sbjct: 289 TAIPKVVARLGAQKLNGVLHPGTANVFVGVLYGATAIV 326
>SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)
Length = 114
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 529 IYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAP 654
++ GN + T+ P+K +T RGT + G A ID P
Sbjct: 44 VFQGNVVNTIRQAPPVKTLTERGT-YEISTGPSGLAIIDLYP 84
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 439 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 552
T +P+V ++L + ++ AN FV +Y +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGALYGASAIV 315
>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
Length = 490
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 378 GYTKTVQIHSYLSTSNCFRKDGAATSCG 461
G TKT Q H ST F KDGA G
Sbjct: 194 GDTKTFQSHGCRSTCGMFMKDGARAIAG 221
>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
Length = 670
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 439 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 552
T +P+V ++L + ++ AN FV +Y +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGVLYGASAIV 315
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -3
Query: 344 PLKTSLSATKTLDIPFALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTS 177
P T + AT T+ + A P L P + S P+F AA NV STS
Sbjct: 175 PPSTLMGATGTVSTVGVPGLGGAQNP-LGPGPQVQASKPLFPAAQNVNGTVASSTS 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,093,966
Number of Sequences: 59808
Number of extensions: 442654
Number of successful extensions: 1332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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