Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b04
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04058-1|AAA52406.1|  333|Homo sapiens ETFA protein.                  219   6e-57
BT009796-1|AAP88798.1|  333|Homo sapiens electron-transfer-flavo...   219   6e-57
BC095457-1|AAH95457.1|  333|Homo sapiens electron-transfer-flavo...   219   6e-57
BC015526-1|AAH15526.1|  333|Homo sapiens electron-transfer-flavo...   219   6e-57
AF436657-1|AAN03712.1|  333|Homo sapiens electron transfer flavo...   219   6e-57
AK096678-1|BAC04838.1|  738|Homo sapiens protein ( Homo sapiens ...    32   2.2  
AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.     32   2.2  
BC038808-1|AAH38808.1|  373|Homo sapiens apolipoprotein B mRNA e...    30   8.9  

>J04058-1|AAA52406.1|  333|Homo sapiens ETFA protein.
          Length = 333

 Score =  219 bits (536), Expect = 6e-57
 Identities = 106/176 (60%), Positives = 135/176 (76%)
 Frame = +1

Query: 124 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 303
           +  L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC   A+ + K  G
Sbjct: 13  AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72

Query: 304 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 483
           I+KVLVA+ DV+KG   E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73  IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132

Query: 484 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKA 651
           +DII IK  +TFVRTIYAGNA+ T++  + +KV +VRGT+F A    GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA 188


>BT009796-1|AAP88798.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  219 bits (536), Expect = 6e-57
 Identities = 106/176 (60%), Positives = 135/176 (76%)
 Frame = +1

Query: 124 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 303
           +  L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC   A+ + K  G
Sbjct: 13  AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72

Query: 304 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 483
           I+KVLVA+ DV+KG   E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73  IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132

Query: 484 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKA 651
           +DII IK  +TFVRTIYAGNA+ T++  + +KV +VRGT+F A    GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA 188


>BC095457-1|AAH95457.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  219 bits (536), Expect = 6e-57
 Identities = 106/176 (60%), Positives = 135/176 (76%)
 Frame = +1

Query: 124 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 303
           +  L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC   A+ + K  G
Sbjct: 13  AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72

Query: 304 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 483
           I+KVLVA+ DV+KG   E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73  IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132

Query: 484 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKA 651
           +DII IK  +TFVRTIYAGNA+ T++  + +KV +VRGT+F A    GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA 188


>BC015526-1|AAH15526.1|  333|Homo sapiens
           electron-transfer-flavoprotein, alpha polypeptide
           (glutaric aciduria II) protein.
          Length = 333

 Score =  219 bits (536), Expect = 6e-57
 Identities = 106/176 (60%), Positives = 135/176 (76%)
 Frame = +1

Query: 124 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 303
           +  L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC   A+ + K  G
Sbjct: 13  AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72

Query: 304 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 483
           I+KVLVA+ DV+KG   E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73  IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132

Query: 484 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKA 651
           +DII IK  +TFVRTIYAGNA+ T++  + +KV +VRGT+F A    GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA 188


>AF436657-1|AAN03712.1|  333|Homo sapiens electron transfer
           flavoprotein alpha-subunit protein.
          Length = 333

 Score =  219 bits (536), Expect = 6e-57
 Identities = 106/176 (60%), Positives = 135/176 (76%)
 Frame = +1

Query: 124 SGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANG 303
           +  L R QSTLV+AEH N+ L+P T NT+ AA ++GG+VS LVAGTKC   A+ + K  G
Sbjct: 13  AASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAG 72

Query: 304 ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPI 483
           I+KVLVA+ DV+KG   E LTPLILATQKQF +THI A A+AFGK +LPRVAAKL+V+PI
Sbjct: 73  IAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPI 132

Query: 484 TDIIGIKDANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKA 651
           +DII IK  +TFVRTIYAGNA+ T++  + +KV +VRGT+F A    GGSA+ +KA
Sbjct: 133 SDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKA 188


>AK096678-1|BAC04838.1|  738|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39359 fis, clone PEBLM2004290. ).
          Length = 738

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 533 MLVTLY*PLRPKILSRSSLFVAQHSLQSHWREGLQQLIKHLRATIRL 673
           ML  L   +  K++ +  +   Q      W +GLQ+ +KHL+ +I+L
Sbjct: 11  MLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQL 57


>AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.
          Length = 2467

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 533 MLVTLY*PLRPKILSRSSLFVAQHSLQSHWREGLQQLIKHLRATIRL 673
           ML  L   +  K++ +  +   Q      W +GLQ+ +KHL+ +I+L
Sbjct: 340 MLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQL 386


>BC038808-1|AAH38808.1|  373|Homo sapiens apolipoprotein B mRNA
           editing enzyme, catalytic polypeptide-like 3F protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 259 FQPQALRHHLQFSWQHSMYFGLLEIVPHCCARRA-LKYFAND 137
           F  + ++HH   SW+  ++   ++   HC A R  L +F +D
Sbjct: 220 FTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDD 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,395,493
Number of Sequences: 237096
Number of extensions: 2100674
Number of successful extensions: 13388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13388
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)