Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b04
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 263 LVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASTKVLC 144
           ++ AT    +  + L    V W+   ST  + +AS  ++C
Sbjct: 254 ILHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNLIC 293


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 256 QPQALRHHLQFSWQHSMY 203
           Q QA + HLQ   QH MY
Sbjct: 187 QSQAQQQHLQAHEQHMMY 204


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 289 QWILQQVHIWFQPQALRHHLQFSWQHS 209
           Q  +QQ  ++ Q Q  +HH   S +H+
Sbjct: 89  QSFMQQHSLYLQQQQQQHHQDSSSEHA 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,149
Number of Sequences: 438
Number of extensions: 3965
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)