Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b03
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    28   0.97 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   3.0  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   6.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.0  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +3

Query: 264 DGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIY 443
           +G SD Y+T      G+PL     T          WNE+  +PV+   +     +++ ++
Sbjct: 487 NGLSDAYITVGFHKFGKPL---YCTRVVKQDLNPIWNEYAFIPVFPDQVKAGEKISIELW 543

Query: 444 DCAGPGKVMVVGGTTISI 497
           D        VVG T I +
Sbjct: 544 DSDRFSPDDVVGRTKIGL 561


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 351 FTTRWNWNEWVTLPVYYSDL-PRNAILAMTI 440
           F   W WNEW+   V   DL P+   +  TI
Sbjct: 452 FNFHWKWNEWIP-DVELDDLHPKKVFMRETI 481


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 LKFSGLYQDGCSDLYVTCQILSDGEPLAL 326
           L  S   +D  S +++  Q+L DG P+ L
Sbjct: 39  LNDSSTLKDSSSRIFINSQVLRDGRPVEL 67


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 72 RAMFSINQIFSQQHLFCFTGH 10
          R +  +N +F Q H+FC   H
Sbjct: 26 RDLLQMNPLFEQDHVFCTFNH 46


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
 Frame = +1

Query: 316 LWRYPS*PLIRH---SLLD 363
           LWR PS PLI H   SLLD
Sbjct: 417 LWREPSFPLIEHHDNSLLD 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,963
Number of Sequences: 5004
Number of extensions: 48690
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)