Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b03
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492... 60 1e-09
04_04_0304 + 24271979-24272345,24273315-24273353,24273930-242740... 30 0.98
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875 29 1.7
09_04_0292 - 16436918-16439233 29 3.0
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 28 5.2
12_01_0346 + 2652181-2653566 27 6.9
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 6.9
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911... 27 6.9
>08_02_0128 -
12848227-12848619,12848699-12848827,12849108-12849279,
12849336-12849488,12850017-12850271,12850846-12851000,
12853319-12853456,12853545-12853715,12853878-12854063,
12854169-12854290,12855617-12855752,12856108-12856203,
12856294-12856356,12856846-12856993,12857324-12857514,
12857916-12857989,12858039-12858171,12858299-12858460,
12861649-12861745,12861866-12861962,12863994-12864141
Length = 1072
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 279 LYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIYD-CAG 455
L+V C + DG L T K+ + + WNE VTL Y DL + LA T++D +G
Sbjct: 62 LFVECTLYIDGVQFGLSTNTRLKSLGSPYCWNELVTLSAKYRDLTPFSHLAFTVWDMSSG 121
Query: 456 PGKVMVVGGTTISIFGKHGMLR 521
+ +VGGTTIS+F L+
Sbjct: 122 EDNIYIVGGTTISLFNSKNQLK 143
>04_04_0304 +
24271979-24272345,24273315-24273353,24273930-24274058,
24274516-24274743,24275621-24275826
Length = 322
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 210 EYDKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVT 386
++DK D + F + G S L V ++ D PLAL WNW + T
Sbjct: 119 QFDKGFEDASIPFGPVEASGRSLLSVEDRLEPDSHPLALTADAVATNGVNPWNWRDTST 177
>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
Length = 517
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 138 VYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLY 284
V +++ YK + +EG+ K D +DP++ F G++ D S Y
Sbjct: 436 VEGTTIGYKRLFQFPVVEGQFLKLSIDGARADPLISFFGVFTDSFSVTY 484
>09_04_0292 - 16436918-16439233
Length = 771
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 189 EGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWN 368
E + T +YDKL+ L +DG + C +L +G LAL ++ K RW
Sbjct: 620 ECRTTSDKYDKLMK--------LGRDGWKEQEAGCPLLYEGAVLALNLVDRKKDAEERWK 671
Query: 369 --WNEWVTLPVYYSDLPRNAILA 431
+ W L +Y + R ++ A
Sbjct: 672 VLAHFWANLLLYIAPSDRASVHA 694
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 72 YRFFSKFSNFRTMNEIDDKF----YYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPM 239
Y FF K+ + E K+ Y S+S + +I + +E +T+P + + LSD +
Sbjct: 146 YEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPMEAVKTQPGFARGLSDGL 205
Query: 240 LKFSGLYQDGCSDLY 284
KF + +G + LY
Sbjct: 206 PKF--VKAEGYAGLY 218
>12_01_0346 + 2652181-2653566
Length = 461
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 372 NEWVTLPVYYSDLPRNAILAMTIYDCAGPGKVMVVGGTTISIFG---KHGMLR 521
N VT+P Y+SD PR A AM AG V ++ T + HG LR
Sbjct: 179 NAVVTVPYYFSDGPREA--AMNAARMAGLTTVRIIDEPTAAAVSHGLHHGRLR 229
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 228 SDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALP 329
S+ + F GLY++ S CQ L PLALP
Sbjct: 225 SNLLATFEGLYKEALSWFEQECQRLEPPMPLALP 258
>07_03_0584 -
19690474-19690589,19690763-19690909,19691068-19691116,
19691240-19691365,19691473-19692651
Length = 538
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 273 SDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAM 434
S + T Q + D + L++ ++ FT RW E +D P+N I ++
Sbjct: 194 SKIKSTLQRIKDRKALSVDLLDNLVEFTNRWTIEEETAAAAASADPPQNPICSI 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,623
Number of Sequences: 37544
Number of extensions: 312638
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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