Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b03
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32) 123 6e-32
SB_16160| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_43230| Best HMM Match : Ammonium_transp (HMM E-Value=2.6e-14) 33 0.19
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_38646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07) 28 5.4
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_51530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 27 9.4
>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
Length = 773
Score = 123 bits (297), Expect(2) = 6e-32
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = +3
Query: 270 CSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIYDC 449
CSDLYVTC I +D PL+LP T+Y+ F+TRWNWNEW+ LP+ Y DLPRNA LA TI+D
Sbjct: 28 CSDLYVTCTIYADDRPLSLPTGTSYRPFSTRWNWNEWLKLPIKYPDLPRNAQLAFTIWDV 87
Query: 450 AGPGKVMVVGGTTISIFGKHG 512
GP K VGGTT+S+FGK+G
Sbjct: 88 YGPRKSTPVGGTTVSLFGKYG 108
Score = 31.5 bits (68), Expect(2) = 6e-32
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKI 179
DKF+YVYSS +D +EIKI
Sbjct: 8 DKFHYVYSSDVDDNLEIKI 26
>SB_16160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 34.3 bits (75), Expect = 0.062
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 357 TRWNWNE--WVTLPVYYSDLPRNAILAMTIYDCAGPGKVMVVGGT 485
+ W W+E W+ + Y+D N + +T D AG G V VVGGT
Sbjct: 151 SHWGWHERGWLKKGISYTD--GNTTIDVTYQDFAGSGIVHVVGGT 193
>SB_43230| Best HMM Match : Ammonium_transp (HMM E-Value=2.6e-14)
Length = 246
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 357 TRWNW--NEWVTLPVYYSDLPRNAILAMTIYDCAGPGKVMVVGGT 485
+ W W N W+ VYY+D N + D AG G V VVGGT
Sbjct: 48 SHWGWDANGWLKKGVYYND--GNRTEHVFYQDFAGSGVVHVVGGT 90
>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +3
Query: 309 GEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIY 443
G L P+ TT ++ TR W +W+ + LPR + L +T+Y
Sbjct: 697 GGCLLCPIETTTQSKLTRKFSELLQWGDWLKFDIPVKRLPRESRLCLTLY 746
>SB_38646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 219 KLLSDPMLKFSGLYQDGCSDLYVTC 293
KLL+DP K +GL+ DL+V C
Sbjct: 228 KLLADPNAKTAGLFYYDILDLFVAC 252
>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
Length = 389
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 520 LSMPCFPNIDMVVPPTTITLPGPAQ 446
+S+PCF +ID +V PT++ G +Q
Sbjct: 98 VSLPCFEHIDDLVRPTSLVPVGMSQ 122
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 369 WNEWVTLPVYYSDLPRNAILAMTIY 443
WNE++ L + D+PR A L + ++
Sbjct: 702 WNEFINLNILVCDIPRMARLCLVLF 726
>SB_7994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 195 KRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAFTTRWNW 371
K KP+ + + P LK + +DG + Y DG LA V ++ T W+W
Sbjct: 40 KGIKPDIN-IFEYPSLKLYRVLRDGTEEAYANLDFSPDGSMLA-SVGSSPDFMLTVWDW 96
>SB_51530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 143 VNIIKLVVYFVHCSKVAKLTKKPIEQCFL*IRFLVSSTYF 24
V+I+ + YF H S V+ L P + F + LV S YF
Sbjct: 197 VSILVDIPYFEHFSDVSSLVDIPYFEHFSDVSSLVDSPYF 236
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 455 TGTV-VDSHS*YSITGQITVVHRKGYPFIPIPSSSECLISGHDG*RQR 315
T T+ VDSH Y + G R+ F I SSE L G+D R R
Sbjct: 173 TSTINVDSHLVYEMVGNGNNEERRAPTFGRIRKSSEILAIGYDRFRVR 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,413
Number of Sequences: 59808
Number of extensions: 364588
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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