Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11b03
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 48 3e-06
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 48 3e-06
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 48 3e-06
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 48 3e-06
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 48 3e-06
Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical pr... 28 4.7
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 6.2
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 6.2
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 6.2
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 6.2
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 6.2
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 302
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 303 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 467
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 468 -------MVVGGTTISIFGKHGMLR 521
+V + +S+F K G+L+
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILK 141
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 302
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 303 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 467
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 468 -------MVVGGTTISIFGKHGMLR 521
+V + +S+F K G+L+
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILK 141
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 302
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 7 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 56
Query: 303 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 467
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 57 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 116
Query: 468 -------MVVGGTTISIFGKHGMLR 521
+V + +S+F K G+L+
Sbjct: 117 NNSTFSRRLVAQSKLSMFSKRGILK 141
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 302
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 11 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 60
Query: 303 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 467
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 61 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 120
Query: 468 -------MVVGGTTISIFGKHGMLR 521
+V + +S+F K G+L+
Sbjct: 121 NNSTFSRRLVAQSKLSMFSKRGILK 145
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +3
Query: 123 DKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKLLSDPMLKFSGLYQDGCSDLYVTCQIL 302
+ F +VYS L V++K+ EG + +L+ P+ + + L+ +++ V C
Sbjct: 11 ESFSFVYSCDLQTNVQVKVAEFEGI-----FRDVLN-PVRRLNQLF----AEITVYCNNQ 60
Query: 303 SDGEPLALPVMTTYKAFTTR-----WNWNEWVTLPVYYSDLPRNAILAMTIYDCAGPGKV 467
G P+ T + WNEW+TLP+ YSDL R+A L +TI++ V
Sbjct: 61 QIGYPVCTSFHTPPDSSQLARQKLIQKWNEWLTLPIRYSDLSRDAFLHITIWEHEDDEIV 120
Query: 468 -------MVVGGTTISIFGKHGMLR 521
+V + +S+F K G+L+
Sbjct: 121 NNSTFSRRLVAQSKLSMFSKRGILK 145
>Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical
protein C01G10.2 protein.
Length = 343
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 301 RIWQVTYKSEHPSW*SPENFNIGSDSSLSYSGLVLLPSRVPIFISTL 161
RIW V +EH S NF + S+ L+Y GL+ P + ++ L
Sbjct: 148 RIWNVA--TEHLSRSENSNFMLFSNEHLAYIGLLSTPEHMQLWAVAL 192
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein 1,
isoform a protein.
Length = 953
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 GLYQDGCSDLYVTCQI-LSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAIL 428
G+ G SD Y C++ L+ A T+ K T WNE + V + DLP+ L
Sbjct: 843 GMDSTGFSDPY--CKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKT-L 899
Query: 429 AMTIYD 446
+ +YD
Sbjct: 900 QIGVYD 905
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein 1,
isoform b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 GLYQDGCSDLYVTCQI-LSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAIL 428
G+ G SD Y C++ L+ A T+ K T WNE + V + DLP+ L
Sbjct: 918 GMDSTGFSDPY--CKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKT-L 974
Query: 429 AMTIYD 446
+ +YD
Sbjct: 975 QIGVYD 980
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein 1,
isoform c protein.
Length = 962
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 GLYQDGCSDLYVTCQI-LSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAIL 428
G+ G SD Y C++ L+ A T+ K T WNE + V + DLP+ L
Sbjct: 852 GMDSTGFSDPY--CKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKT-L 908
Query: 429 AMTIYD 446
+ +YD
Sbjct: 909 QIGVYD 914
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein 1,
isoform d protein.
Length = 1106
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 GLYQDGCSDLYVTCQI-LSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAIL 428
G+ G SD Y C++ L+ A T+ K T WNE + V + DLP+ L
Sbjct: 996 GMDSTGFSDPY--CKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKT-L 1052
Query: 429 AMTIYD 446
+ +YD
Sbjct: 1053 QIGVYD 1058
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin protein.
Length = 953
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 GLYQDGCSDLYVTCQI-LSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAIL 428
G+ G SD Y C++ L+ A T+ K T WNE + V + DLP+ L
Sbjct: 843 GMDSTGFSDPY--CKVSLTPITSKAHRAKTSTKKRTLNPEWNEQLQFVVPFKDLPKKT-L 899
Query: 429 AMTIYD 446
+ +YD
Sbjct: 900 QIGVYD 905
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,302
Number of Sequences: 27780
Number of extensions: 271334
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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