Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11b03
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K) id...    58   5e-09
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D...    29   1.9  
At3g47220.1 68416.m05127 phosphoinositide-specific phospholipase...    28   3.3  
At5g06410.1 68418.m00717 DNAJ heat shock N-terminal domain-conta...    27   5.8  
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    27   5.8  
At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    27   7.7  
At4g13060.1 68417.m02037 F-box family protein-related contains T...    27   7.7  
At3g60680.1 68416.m06789 expressed protein contains Pfam profile...    27   7.7  
At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-...    27   7.7  
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    27   7.7  

>At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K)
           identical to SP|P42339 Phosphatidylinositol 3-kinase (EC
           2.7.1.137) (PI3-kinase) (PtdIns-3- kinase) (PI3K)
           {Arabidopsis thaliana}
          Length = 814

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +3

Query: 276 DLYVTCQILSDGEPLALPVMTTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIYDCAG 455
           +LY+ C +  DG P  LP+ T  K     + WNE +TL   Y DL  ++ LA+T++D + 
Sbjct: 49  ELYIECALYIDGAPFGLPMRTRLKTTGPPYCWNELITLSSKYRDLTAHSQLAITVWDVSC 108

Query: 456 PGKVMVVGGTTISIF 500
                ++GG T+ +F
Sbjct: 109 GKTEGLIGGATVLLF 123


>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
           binding protein GT-1 GI:598073 from [Arabidopsis
           thaliana]
          Length = 406

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 216 DKLLSDPMLKFSGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKAF--TTRWNWNE 377
           DK   D  + F  +  +G   L +  ++  DG PLA+       A    T WNW E
Sbjct: 204 DKGFDDTSISFGSVEANGRPALNLERRLDHDGHPLAITTAVDAVAANGVTPWNWRE 259


>At3g47220.1 68416.m05127 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 531

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 276 DLYVTCQILSDGEPLALPVM-TTYKAFTTRWNWNEWVTLPVYYSDLPRNAILAMTIYD 446
           DLYV   I   G P    +M TT K    +  W E  T P+ Y DL   A+++  +YD
Sbjct: 430 DLYVRISIA--GVPHDEKIMNTTVKNNEWKPTWGEEFTFPLTYPDL---ALISFEVYD 482


>At5g06410.1 68418.m00717 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P36540 Chaperone
           protein hscB (HSC20) {Escherichia coli O157:H7};
           contains Pfam profile PF00226 DnaJ domain
          Length = 252

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 RTMNEIDDKFYYVYSSSLDYKVEIKIGTLEGK 197
           R++  +DD   Y     L+ K EI  G+LEGK
Sbjct: 83  RSIQPVDDSVDYFQIFGLEKKYEIDPGSLEGK 114


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 451 PVPVK*WWSVARPYRYL 501
           P P+K W++V RP RY+
Sbjct: 22  PKPIKPWFTVTRPMRYM 38


>At5g24350.1 68418.m02870 expressed protein weak similarity to
           neuroblastoma-amplified protein [Homo sapiens]
           GI:4337460
          Length = 2376

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 249 SGLYQDGCSDLYVTCQILSDGEPLALPVMTTYKA-FTTRWN 368
           S +  +GC DLY  C    D E +   +   Y    T +WN
Sbjct: 821 SKVIDEGCIDLYTVCFFKDDVEAVDCALQCLYLCKVTDKWN 861


>At4g13060.1 68417.m02037 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 335

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  YRFFSKFSNFRTMNEIDDKFYYVYSSSLDYKVEIKIGT 185
           ++ +S  +NF  M   +D  YY YS+S++  V  +  T
Sbjct: 20  FKSYSDVNNFHNMPPTEDCHYYNYSASVNGLVTFRNNT 57


>At3g60680.1 68416.m06789 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 499

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 93  SNFRTMNEIDDKFYYVYSSSLDYKVEIKIGTLEGKRTKPEYDKL 224
           SN + ++++  +FY  Y  SLD++ ++ IG+    R +    KL
Sbjct: 160 SNLQKLSDLK-QFYRNYRQSLDFESDLAIGSCLESRVQENQSKL 202


>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
           alpha-L-fucosidase, putative similar to
           alpha-L-fucosidase SP:P10901 from [Dictyostelium
           discoideum]
          Length = 506

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 IGTLEGKRTKPEYDKLLSDPMLKFSGLYQD 266
           +  +E +  K   DK  +DP++ + GLY D
Sbjct: 450 LNVVESRSLKLVVDKARTDPLISYLGLYMD 479


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 402 SDLPRNAILAMTIYDCAGPGKVMVVGGTTISI-FGK 506
           + +P NAI    +   A P  VM  GG T+S+ FGK
Sbjct: 330 NSVPNNAIQPSQVPHQALPNSVMQQGGQTVSLNFGK 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,969,834
Number of Sequences: 28952
Number of extensions: 255042
Number of successful extensions: 527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)