Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a23
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   108   2e-25
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   108   2e-25
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   4.3  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    24   4.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   4.3  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    23   7.5  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    23   9.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    23   9.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   9.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  108 bits (259), Expect = 2e-25
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
           VR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GKI
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKI 61

Query: 241 VVNLTGRLNK 270
           V+ L GR+NK
Sbjct: 62  VIQLNGRINK 71


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  108 bits (259), Expect = 2e-25
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
           VR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GKI
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKI 61

Query: 241 VVNLTGRLNK 270
           V+ L GR+NK
Sbjct: 62  VIQLNGRINK 71


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 IGEFEIVDDHRAGKIVVNLTGR 261
           IGE  I+ D+RA  I++ + GR
Sbjct: 535 IGELRILVDYRAQSIILPIFGR 556


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 103 NAEKRGKRQVLI--RPCSKVIVKFLTVMMKHGYIGEFEI 213
           +A+  G R V++  RPC      FLT+M ++ Y+ E  I
Sbjct: 67  DAQLGGIRNVVLINRPCFAASDNFLTLMGQNWYLKERNI 105


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 212 ISNSPM*PCFIITVKNLTMTLEQGLMRTCLFP--RFSALCIDFKASLNT 72
           I ++P  PC I  V+    + +  L+R  L+P  R S L +D  + L T
Sbjct: 350 IDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKT 398


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKR 117
           +R+N+L   L ++H AEKR
Sbjct: 133 LRVNMLESMLYALHYAEKR 151


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 16  CXFGSLRSAS*ILXXVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIV 162
           C  G  R    +L  +  +V  D ++ + N     K+Q+  +PCS + V
Sbjct: 63  CGAGIGRVTENVLLKIASHV--DLVEPVENFISTAKKQLATKPCSFINV 109


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 216 NDFKLSDVTVLHHHC*KLNDDFGTGPDEDLSFPSL 112
           N+F L D+T L + C +++    T  D  + F ++
Sbjct: 65  NEFALKDLTWLQNCCNEISQSSSTELDASVLFEAV 99


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 128  CLFPRFSALCI 96
            CL PRFS +C+
Sbjct: 1294 CLLPRFSYICL 1304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,745
Number of Sequences: 5004
Number of extensions: 12501
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)