Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a23
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          120   1e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   120   2e-28
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           75   8e-15
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.13 
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    26   3.6  
11_04_0367 - 16840732-16843428,16844425-16844760                       25   6.3  
01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996     25   8.3  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  120 bits (290), Expect = 1e-28
 Identities = 56/70 (80%), Positives = 64/70 (91%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
           VR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2   VRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKI 61

Query: 241 VVNLTGRLNK 270
           VV L GRLNK
Sbjct: 62  VVELNGRLNK 71


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  120 bits (288), Expect = 2e-28
 Identities = 55/70 (78%), Positives = 64/70 (91%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
           VR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2   VRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKI 61

Query: 241 VVNLTGRLNK 270
           VV L GRLNK
Sbjct: 62  VVELNGRLNK 71


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = +1

Query: 73  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 253 TGRL 264
            GR+
Sbjct: 65  HGRI 68


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 214 VDDHRAGKIVVNLTGRLNK 270
           VDDH++G+I++   GRLNK
Sbjct: 912 VDDHKSGEIILEFDGRLNK 930


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 RQVLIRPCSKVIVKFLTVMMKHGY-IGEFEIVDDHRAGKIVVN 249
           R  +   CS V+ K LT+ M+HGY + + E +D H    + ++
Sbjct: 304 RAFIDNACSMVLKKSLTI-MEHGYAVIDLEKLDPHNVDDLFLS 345


>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 209 SNSPM*PCFIITVKNLTMTLEQGLMRTCLFPR 114
           + S + P   ++ KN+ + L+Q  +  CLFP+
Sbjct: 424 AQSEVLPALKLSYKNMPVHLKQCFLALCLFPK 455


>01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996
          Length = 507

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   WTVLSIRFATKRELNLXXGAXERIE*RLKIY 98
           W    I+F TK+EL       ERI  R K+Y
Sbjct: 270 WREPFIKFLTKQELPQDKDEAERISRRSKLY 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,167,863
Number of Sequences: 37544
Number of extensions: 75122
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)