Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a23
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             74   2e-14
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.78 
SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)             25   9.5  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 189
           VR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 2   VRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 91  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 216
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 91  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFE 210
           K+IHN   RGKR  +++    V   F   TV+M++G    F+
Sbjct: 204 KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQ 245


>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 248 FTTILPAL*SSTISNSPM*PCFIITVKNLTMTLEQGLMRTC 126
           FT   P L ++  +   M  CF++T+ + ++    G +RTC
Sbjct: 215 FTHASPTLFNAGTNRPQMSSCFLLTMSDDSIEGIYGTLRTC 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,154,793
Number of Sequences: 59808
Number of extensions: 98353
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)