Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a23
         (271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   134   8e-33
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   0.34 
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  134 bits (324), Expect = 8e-33
 Identities = 64/70 (91%), Positives = 68/70 (97%)
 Frame = +1

Query: 61  VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
           VRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGKI
Sbjct: 2   VRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKI 61

Query: 241 VVNLTGRLNK 270
           VVNLTGRLNK
Sbjct: 62  VVNLTGRLNK 71


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 70   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 243
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 244  VN 249
            +N
Sbjct: 886  LN 887


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 270 LV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 127
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 HGYIGEFEIVDDHRAGKIVVNLTGRLN 267
           HG +G+  ++D    G I  N   RLN
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLN 648


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 121 KRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRL 264
           +RQV +R C    +K +  + K G     + + DH   K+++ +  +L
Sbjct: 149 ERQVQMRRCENRKMKTIQEVEKEGSTESQDSIHDHPMVKVLMEINDQL 196


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
          protein F13H10.4c protein.
          Length = 792

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 5  LDRSVXSVRYEARAKSXPWC 64
          ++R   ++RYE  A+  PWC
Sbjct: 14 VERPSATIRYEPVAEPEPWC 33


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
          protein F13H10.4b protein.
          Length = 789

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 5  LDRSVXSVRYEARAKSXPWC 64
          ++R   ++RYE  A+  PWC
Sbjct: 14 VERPSATIRYEPVAEPEPWC 33


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
          protein F13H10.4a protein.
          Length = 796

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 5  LDRSVXSVRYEARAKSXPWC 64
          ++R   ++RYE  A+  PWC
Sbjct: 21 VERPSATIRYEPVAEPEPWC 40


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 266 FSLPVRFTTILPAL*SSTISNSPM 195
           + LP RF+T+L AL   T+ NS M
Sbjct: 329 YDLP-RFSTVLKALYGCTVGNSDM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,566,206
Number of Sequences: 27780
Number of extensions: 68399
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)