Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a23
         (271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   0.67 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 0.67
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 234 ASSVIINDFKLSDVTVLHHH 175
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 22  FGSLRSAS*ILXXVRMNVLSDALKSIHNAEKRGKR 126
           FGS+  A  I+  + +        SI NAE+RG R
Sbjct: 197 FGSVAIAIAIVELIGIICALCLANSIKNAERRGYR 231


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 175 VMMKHGYIGEFEIVDDHRAGKI 240
           VM++ G  GE+  + ++RAGK+
Sbjct: 489 VMVEDG--GEYSCMAENRAGKV 508


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 175 VMMKHGYIGEFEIVDDHRAGKI 240
           VM++ G  GE+  + ++RAGK+
Sbjct: 489 VMVEDG--GEYSCMAENRAGKV 508


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 261 SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLN 160
           S  E+  +L +S+  +  ++ +++ LHH   K+N
Sbjct: 375 SPTELPKHLPTSLTKSKMEVMELSDLHHPNCKIN 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,731
Number of Sequences: 438
Number of extensions: 727
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)