Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a23
(271 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 120 1e-28
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 120 1e-28
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 120 1e-28
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 119 3e-28
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 113 2e-26
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 74 1e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 73 2e-14
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 0.42
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 26 3.9
At2g28930.1 68415.m03515 protein kinase (APK1b) identical to pro... 25 6.8
At5g55440.1 68418.m06906 hypothetical protein contains Pfam prof... 25 9.0
At1g31690.1 68414.m03890 copper amine oxidase, putative similar ... 25 9.0
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 120 bits (290), Expect = 1e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +1
Query: 61 VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
VR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKI 61
Query: 241 VVNLTGRLNK 270
VV L GRLNK
Sbjct: 62 VVELNGRLNK 71
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 1e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +1
Query: 61 VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
VR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKI 61
Query: 241 VVNLTGRLNK 270
VV L GRLNK
Sbjct: 62 VVELNGRLNK 71
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 120 bits (290), Expect = 1e-28
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +1
Query: 61 VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
VR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKI 61
Query: 241 VVNLTGRLNK 270
VV L GRLNK
Sbjct: 62 VVELNGRLNK 71
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 119 bits (286), Expect = 3e-28
Identities = 55/70 (78%), Positives = 63/70 (90%)
Frame = +1
Query: 61 VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
VR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKI
Sbjct: 2 VRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKI 61
Query: 241 VVNLTGRLNK 270
VV L GRLNK
Sbjct: 62 VVELNGRLNK 71
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 113 bits (272), Expect = 2e-26
Identities = 53/69 (76%), Positives = 60/69 (86%)
Frame = +1
Query: 61 VRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKI 240
VR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GKI
Sbjct: 8 VRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKI 67
Query: 241 VVNLTGRLN 267
VV L GRLN
Sbjct: 68 VVELNGRLN 76
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 73.7 bits (173), Expect = 1e-14
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1
Query: 73 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 253 TGRLN 267
GR+N
Sbjct: 65 QGRVN 69
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 73.3 bits (172), Expect = 2e-14
Identities = 32/65 (49%), Positives = 47/65 (72%)
Frame = +1
Query: 73 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 253 TGRLN 267
GR+N
Sbjct: 65 QGRVN 69
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 136 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 243
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 252 EIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 127
EI ++ S ++ +FK++++ LH C +L G E L
Sbjct: 964 EIEESIRQSSLLEEFKMAELPALHDKCIELVQLLVEGSAEQL 1005
>At2g28930.1 68415.m03515 protein kinase (APK1b) identical to
protein kinase APK1B [Arabidopsis thaliana]
SWISS-PROT:P46573
Length = 423
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 243 NNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPD 136
+N +SVI DFK S++ + + KL+ DFG D
Sbjct: 205 HNAETSVIYRDFKTSNILLDSEYNAKLS-DFGLAKD 239
>At5g55440.1 68418.m06906 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 365
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 209 SNSPM*PCFIITVKNLTMTLEQGLM 135
S+ P PC ++T K L + E+GL+
Sbjct: 22 SSLPPSPCLVLTTKKLRGSPEEGLI 46
>At1g31690.1 68414.m03890 copper amine oxidase, putative similar to
copper amine oxidase [Lens culinaris]
gi|15451834|gb|AAB34918
Length = 420
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 106 AEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRL 264
AE G + +RP ++ + +T + + YI E+E K+ V LTG L
Sbjct: 126 AEVPGLKITEVRPDVSLVARMVTTVGNYDYIIEYEFKPSGSI-KMGVGLTGVL 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,097
Number of Sequences: 28952
Number of extensions: 64369
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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