Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a22
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 218 4e-58
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 218 4e-58
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 2e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.27
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 3.4
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.5
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 4.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 5.9
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.8
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 218 bits (533), Expect = 4e-58
Identities = 95/128 (74%), Positives = 117/128 (91%)
Frame = +3
Query: 24 KGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
+GRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 384 ECADLWPR 407
ECADLWPR
Sbjct: 123 ECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 218 bits (533), Expect = 4e-58
Identities = 95/128 (74%), Positives = 117/128 (91%)
Frame = +3
Query: 24 KGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
+GRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++A
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLA 62
Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
TVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAK
Sbjct: 63 TVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAK 122
Query: 384 ECADLWPR 407
ECADLWPR
Sbjct: 123 ECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +3
Query: 177 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 329
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 330 VNNKGEMKGSAITGPVAKE 386
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.27
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = -1
Query: 328 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 149
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 148 IPWTAITYRFFAPVLSAQLITAPTGRP 68
P +A A +++ LI +P P
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 478 PSTSKSNPK-NYNLRNRHLQCKCAKLKYTF 564
P+T+ SN N+ +RNR +C+ L TF
Sbjct: 11 PTTATSNSSLNFFVRNREKSIRCSSLHQTF 40
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 210 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 320
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 358 EPFISPLLLTMTPALSSKYINTPS 287
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -1
Query: 400 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 248
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 406 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 269
R H+ AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 195 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 326
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 398 VAAYCLKRELYRLNIRLRLVAAF--YFPFLVHQNQTRKIIICVIDIYNVNALSLNIRLRL 571
V +CL R L + F Y +H + K+I C D+Y + ++ RLR+
Sbjct: 44 VPRHCLLRSLTYATTNFTKFSKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYK-RLRI 102
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 151 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 29
L+P A Y P +A T+PT P I++ PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 317 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 222
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 116 CPCVVGAVDYCSHWETQGDTEFR 48
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,260
Number of Sequences: 5004
Number of extensions: 48217
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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